Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-18/figures/sub-18_task-asrt_run-2_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-18/figures/sub-18_task-asrt_run-2_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-18/figures/sub-18_task-asrt_run-2_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-18/figures/sub-18_task-asrt_run-2_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-18/figures/sub-18_task-asrt_run-2_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-18/figures/sub-18_task-asrt_run-2_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-18/figures/sub-18_task-asrt_run-2_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-18/figures/sub-18_task-asrt_run-2_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-18/func/sub-18_task-asrt_run-2_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum8e8f8a2cb33f9ccc003c1c2e53e8fb81

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime10:03:33.302500
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13C_LATEST_20121124
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.999526, -0.00789953, -0.0297631, 0.00697812, 0.999497, -0.0309357]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST_Jeon
ProtocolNameEPI_DGIST_2
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.142334
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_2
SeriesNumber3
ShimSetting[-9728, -13687, -8269, 380, -263, 15, -434, -175]
SliceThickness4
SliceTiming[0.99, 0, 1.0575, 0.0675, 1.1225, 0.1325, 1.19, 0.2, 1.255, 0.265, 1.32, 0.33, 1.3875, 0.3975, 1.4525, 0.4625, 1.52, 0.53, 1.585, 0.595, 1.65, 0.66, 1.7175, 0.7275, 1.7825, 0.7925, 1.85, 0.86, 1.915, 0.925]
SoftwareVersionssyngo MR D13C
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp329.686
dcmmetaaffine[[-2.998577356338501, 0.02093436010181904, -0.14396418631076813, 94.10106658935547], [0.023698585107922554, 2.998491048812866, -0.14742423593997955, -115.647705078125], [-0.08928939700126648, 0.09280723333358765, 4.795575141906738, -70.85430908203125], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0010540607734806629
aqi0.001923656555248619
dummy_trs2
dvarsnstd11.664315746565105
dvarsstd1.1196429647368418
dvarsvstd0.9600328950138515
efc0.6133
fber181.0577
fdmean0.06139605446297908
fdnum11
fdperc3.0386740331491713
fwhmavg3.699956899808018
fwhmx3.9026
fwhmy3.8273333333333333
fwhmz3.36993736609072
gcor0.0370789
gsrx0.07302912324666977
gsry0.02797587215900421
sizet362
sizex64
sizey64
sizez30
snr1.8859894927210528
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.800000190734863
summarybgk24.5318
summarybgmad39.2582
summarybgmean131.646
summarybgmedian56.0
summarybgn83054.0
summarybgp0528.0
summarybgp95515.0
summarybgstdv217.2364
summaryfgk0.4234
summaryfgmad379.5708
summaryfgmean822.8837
summaryfgmedian753.0
summaryfgn39826.0
summaryfgp05294.0
summaryfgp951576.0
summaryfgstdv399.2549
tsnr104.55038742860779
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