Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-16/figures/sub-16_task-asrt_run-3_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-16/figures/sub-16_task-asrt_run-3_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-16/figures/sub-16_task-asrt_run-3_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-16/figures/sub-16_task-asrt_run-3_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-16/figures/sub-16_task-asrt_run-3_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-16/figures/sub-16_task-asrt_run-3_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-16/figures/sub-16_task-asrt_run-3_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-16/figures/sub-16_task-asrt_run-3_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-16/func/sub-16_task-asrt_run-3_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum9bbd5f2fa28ce6bbdab25dda4456a6c0

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime10:41:43.835000
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13C_LATEST_20121124
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.999544, -0.0217323, -0.0209686, 0.0191922, 0.993233, -0.11454]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST_Jeon
ProtocolNameEPI_DGIST_3
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.1304
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_3
SeriesNumber6
ShimSetting[-9753, -13688, -8259, 217, -268, -301, -147, -149]
SliceThickness4
SliceTiming[0.9875, 0, 1.055, 0.065, 1.12, 0.13, 1.1875, 0.1975, 1.2525, 0.2625, 1.3175, 0.3275, 1.385, 0.395, 1.45, 0.46, 1.5175, 0.5275, 1.5825, 0.5925, 1.6475, 0.6575, 1.715, 0.725, 1.78, 0.79, 1.8475, 0.8575, 1.9125, 0.9225]
SoftwareVersionssyngo MR D13C
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp302.2
dcmmetaaffine[[-2.998631715774536, 0.05757666751742363, -0.11191626638174057, 89.7640609741211], [0.06519676744937897, 2.9796998500823975, -0.5476073026657104, -120.134765625], [-0.06290572136640549, 0.34361860156059265, 4.76734733581543, -61.54439163208008], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0028785399449035814
aqi0.019143188870523416
dummy_trs1
dvarsnstd16.74751126309393
dvarsstd0.7707030750552486
dvarsvstd0.7421276744475137
efc0.5693
fber239.2868
fdmean0.09433128362252495
fdnum26
fdperc7.162534435261708
fwhmavg3.508359680594174
fwhmx3.7725666666666666
fwhmy3.6097
fwhmz3.1428123751158563
gcor0.0382572
gsrx0.1140994280576706
gsry-0.005466865375638008
sizet363
sizex64
sizey64
sizez30
snr1.8999774778363805
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.800000190734863
summarybgk18.8837
summarybgmad28.6514
summarybgmean104.8375
summarybgmedian48.0
summarybgn92133.0
summarybgp0528.0
summarybgp95413.0
summarybgstdv151.4073
summaryfgk0.6885
summaryfgmad366.6765
summaryfgmean795.0387
summaryfgmedian735.0
summaryfgn30747.0
summaryfgp05260.0
summaryfgp951522.0
summaryfgstdv386.8404
tsnr39.71777887851931
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