Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-13/figures/sub-13_task-asrt_run-1_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-13/figures/sub-13_task-asrt_run-1_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-13/figures/sub-13_task-asrt_run-1_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-13/figures/sub-13_task-asrt_run-1_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-13/figures/sub-13_task-asrt_run-1_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-13/figures/sub-13_task-asrt_run-1_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-13/figures/sub-13_task-asrt_run-1_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-13/figures/sub-13_task-asrt_run-1_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-13/func/sub-13_task-asrt_run-1_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumc759c942964af6047e4ba83e3ef47a2f

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime12:35:13.657500
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13C_LATEST_20121124
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.999798, -0.0104828, 0.0171549, 0.0104702, 0.999945, 0.000820419]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST_Jeon
ProtocolNameEPI_DGIST_1
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.120295
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_1
SeriesNumber2
ShimSetting[-9739, -13667, -8348, 264, -507, -576, -359, -184]
SliceThickness4
SliceTiming[0.99, 0, 1.055, 0.065, 1.1225, 0.1325, 1.1875, 0.1975, 1.255, 0.265, 1.32, 0.33, 1.385, 0.395, 1.4525, 0.4625, 1.5175, 0.5275, 1.585, 0.595, 1.65, 0.66, 1.715, 0.725, 1.7825, 0.7925, 1.8475, 0.8575, 1.915, 0.925]
SoftwareVersionssyngo MR D13C
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp302.765
dcmmetaaffine[[-2.9993937015533447, 0.03141072392463684, 0.08238036185503006, 92.77417755126953], [0.03144833445549011, 2.9998345375061035, 0.0030750585719943047, -119.82923889160156], [0.051464762538671494, -0.0024612576235085726, 4.799292087554932, -80.43859100341797], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 514]
dcmmetaslice_dim2
dcmmetaversion0.6
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dvarsnstd20.286896792929685
dvarsstd1.2954053815039048
dvarsvstd0.9233812641406248
efc0.5944
fber164.8548
fdmean0.06693549053379333
fdnum19
fdperc3.7037037037037037
fwhmavg3.0838491310945613
fwhmx3.2829566666666667
fwhmy3.2829866666666665
fwhmz2.6856040599503492
gcor0.083861
gsrx0.07052981108427048
gsry0.02208765223622322
sizet513
sizex64
sizey64
sizez30
snr2.2049521616046
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.800000190734863
summarybgk12.8149
summarybgmad32.1259
summarybgmean95.8882
summarybgmedian51.0
summarybgn92150.0
summarybgp0527.0
summarybgp95350.0
summarybgstdv120.0766
summaryfgk-0.3291
summaryfgmad310.1572
summaryfgmean674.6695
summaryfgmedian657.0
summaryfgn30730.0
summaryfgp05180.0
summaryfgp951181.0
summaryfgstdv297.9608
tsnr60.81399490660988
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