Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-12/figures/sub-12_task-asrt_run-3_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-12/figures/sub-12_task-asrt_run-3_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-12/figures/sub-12_task-asrt_run-3_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-12/figures/sub-12_task-asrt_run-3_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-12/figures/sub-12_task-asrt_run-3_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-12/figures/sub-12_task-asrt_run-3_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-12/figures/sub-12_task-asrt_run-3_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-12/figures/sub-12_task-asrt_run-3_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-12/func/sub-12_task-asrt_run-3_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum63a5c9f273bd02d99b7ee1a31759fc9e

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime11:34:3.197500
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13C_LATEST_20121124
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.99976, 0.0151486, 0.0158212, -0.0139602, 0.997256, -0.0726995]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST_Jeon
ProtocolNameEPI_DGIST_3
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.131435
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_3
SeriesNumber4
ShimSetting[-9722, -13625, -8151, 129, -398, -233, -4, -256]
SliceThickness4
SliceTiming[0.99, 0, 1.055, 0.065, 1.1225, 0.1325, 1.1875, 0.1975, 1.2525, 0.265, 1.32, 0.33, 1.385, 0.395, 1.4525, 0.4625, 1.5175, 0.5275, 1.5825, 0.5925, 1.65, 0.66, 1.715, 0.725, 1.7825, 0.7925, 1.8475, 0.8575, 1.9125, 0.9225]
SoftwareVersionssyngo MR D13C
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp314.499
dcmmetaaffine[[-2.9992802143096924, -0.04188057407736778, 0.0810195654630661, 95.04945373535156], [-0.045445799827575684, 2.9917685985565186, -0.34781378507614136, -114.44038391113281], [0.04746357351541519, 0.21809855103492737, 4.786696434020996, -88.77650451660156], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.009151294765840218
aqi0.007154764214876034
dummy_trs1
dvarsnstd18.322477580662984
dvarsstd1.1966294384254155
dvarsvstd1.015622311878453
efc0.5663
fber198.5319
fdmean0.1227036783809701
fdnum33
fdperc9.090909090909092
fwhmavg2.972749408281535
fwhmx3.0479066666666665
fwhmy3.1401333333333334
fwhmz2.730208224844606
gcor0.0156381
gsrx0.037039875984191895
gsry0.014934851787984371
sizet363
sizex64
sizey64
sizez30
snr2.168068809541201
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.800000190734863
summarybgk24.8336
summarybgmad27.4649
summarybgmean83.0025
summarybgmedian47.0
summarybgn94530.0
summarybgp0527.0
summarybgp95275.0
summarybgstdv100.5936
summaryfgk0.3584
summaryfgmad299.3917
summaryfgmean696.9281
summaryfgmedian669.0
summaryfgn28350.0
summaryfgp05226.0
summaryfgp951250.0
summaryfgstdv308.5641
tsnr56.68537056678906
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