Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-11/figures/sub-11_task-asrt_run-3_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-11/figures/sub-11_task-asrt_run-3_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-11/figures/sub-11_task-asrt_run-3_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-11/figures/sub-11_task-asrt_run-3_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-11/figures/sub-11_task-asrt_run-3_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-11/figures/sub-11_task-asrt_run-3_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-11/figures/sub-11_task-asrt_run-3_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-11/figures/sub-11_task-asrt_run-3_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-11/func/sub-11_task-asrt_run-3_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumba886b4d038a931c18bdc24b848b7523

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime10:04:32.280000
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13C_LATEST_20121124
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.994702, -0.102434, 0.00866025, 0.102792, 0.992097, -0.0719512]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST_Jeon
ProtocolNameEPI_DGIST_3
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.121784
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_3
SeriesNumber4
ShimSetting[-9729, -13721, -8190, 224, -270, -353, -168, -84]
SliceThickness4
SliceTiming[0.99, 0, 1.0575, 0.0675, 1.1225, 0.1325, 1.1875, 0.2, 1.255, 0.265, 1.32, 0.33, 1.3875, 0.3975, 1.4525, 0.4625, 1.5175, 0.53, 1.585, 0.595, 1.65, 0.66, 1.7175, 0.7275, 1.7825, 0.7925, 1.8475, 0.8575, 1.915, 0.925]
SoftwareVersionssyngo MR D13C
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp331.678
dcmmetaaffine[[-2.9841063022613525, 0.30837738513946533, 0.0058633871376514435, 83.8641128540039], [0.307302862405777, 2.9762914180755615, -0.34780898690223694, -127.50830078125], [0.025980744510889053, 0.21585357189178467, 4.787378311157227, -72.92971801757812], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 364]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.003048708791208791
aqi0.0036159550714285715
dummy_trs0
dvarsnstd18.944093712038562
dvarsstd1.2154647404132222
dvarsvstd0.9780477731680446
efc0.6133
fber143.1348
fdmean0.08555261890654496
fdnum22
fdperc6.043956043956044
fwhmavg3.1757000594688822
fwhmx3.3134333333333337
fwhmy3.2205
fwhmz2.993166845073313
gcor0.0646284
gsrx0.10380952060222626
gsry0.0038539280649274588
sizet364
sizex64
sizey64
sizez30
snr1.894733217999752
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.799999713897705
summarybgk16.6615
summarybgmad37.2565
summarybgmean135.3086
summarybgmedian54.0
summarybgn90334.0
summarybgp0528.0
summarybgp95551.0
summarybgstdv197.672
summaryfgk1.0235
summaryfgmad313.6091
summaryfgmean698.3493
summaryfgmedian648.0
summaryfgn32546.0
summaryfgp05220.0
summaryfgp951333.0
summaryfgstdv341.9954
tsnr79.28491321392357
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