Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-03/figures/sub-03_task-asrt_run-1_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-03/figures/sub-03_task-asrt_run-1_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-03/figures/sub-03_task-asrt_run-1_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-03/figures/sub-03_task-asrt_run-1_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-03/figures/sub-03_task-asrt_run-1_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-03/figures/sub-03_task-asrt_run-1_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-03/figures/sub-03_task-asrt_run-1_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-03/figures/sub-03_task-asrt_run-1_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-03/func/sub-03_task-asrt_run-1_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum9d1a589bc7d82059c9c7b34550116a74

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime09:36:45.545000
BandwidthPerPixelPhaseEncode25.202
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13C_LATEST_20121124
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00061999
DeviceSerialNumber45758
DwellTime4.3e-06
EchoTime0.03
EchoTrainLength64
EffectiveEchoSpacing0.00061999
FlipAngle90
ImageOrientationPatientDICOM[0.998721, 0.0276539, -0.0423286, -0.0278968, 0.999597, -0.00515844]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'MOSAIC']
ImagingFrequency123.2
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressStreet StreetNo,City /652E4B/,District,KR,ZIP
InstitutionNameDGMIF
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1815
ProcedureStepDescriptionDGMIF^DGIST_Jeon
ProtocolNameEPI_DGIST_1
PulseSequenceDetails%SiemensSeq%\ep2d_bold
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE64
RepetitionTime2
SAR0.109237
ScanOptionsFS
ScanningSequenceEP
SequenceName*epfid2d1_64
SequenceVariantSK
SeriesDescriptionEPI_DGIST_1
SeriesNumber2
ShimSetting[-9769, -13682, -8124, 261, -363, -125, -421, -43]
SliceThickness4
SliceTiming[0.99, 0, 1.055, 0.065, 1.1225, 0.1325, 1.1875, 0.1975, 1.255, 0.265, 1.32, 0.33, 1.385, 0.395, 1.4525, 0.4625, 1.5175, 0.5275, 1.585, 0.595, 1.65, 0.66, 1.715, 0.725, 1.7825, 0.7925, 1.8475, 0.8575, 1.9125, 0.925]
SoftwareVersionssyngo MR D13C
SpacingBetweenSlices4.8
StationNameAWP45758
TaskNameasrt
TotalReadoutTime0.0390594
TxRefAmp310.945
dcmmetaaffine[[-2.9961628913879395, -0.08369040489196777, -0.2024107277393341, 101.12109375], [-0.08296170830726624, 2.9987924098968506, -0.0303968396037817, -118.47887420654297], [-0.12698577344417572, 0.015475320629775524, 4.7956342697143555, -61.550880432128906], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 30, 514]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.004913735408560311
aqi0.007672141128404669
dummy_trs0
dvarsnstd19.85427591159845
dvarsstd1.277145598362573
dvarsvstd0.9903495938206629
efc0.5799
fber224.7362
fdmean0.06532216656722677
fdnum14
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fwhmx3.9332666666666665
fwhmy3.895766666666667
fwhmz3.4906040279625246
gcor0.0805643
gsrx0.07717394083738327
gsry0.030044090002775192
sizet514
sizex64
sizey64
sizez30
snr1.6713383140999598
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz4.800000190734863
summarybgk32.3742
summarybgmad28.3685
summarybgmean120.4851
summarybgmedian48.0
summarybgn87455.0
summarybgp0528.0
summarybgp95483.0
summarybgstdv200.6745
summaryfgk1.0767
summaryfgmad393.8357
summaryfgmean814.9247
summaryfgmedian726.0
summaryfgn35425.0
summaryfgp05257.0
summaryfgp951651.0
summaryfgstdv434.3763
tsnr53.44217454548925
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