Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-22TK/figures/sub-22TK_task-restlight_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-22TK/figures/sub-22TK_task-restlight_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-22TK/figures/sub-22TK_task-restlight_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-22TK/figures/sub-22TK_task-restlight_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-22TK/figures/sub-22TK_task-restlight_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-22TK/figures/sub-22TK_task-restlight_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-22TK/figures/sub-22TK_task-restlight_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-22TK/figures/sub-22TK_task-restlight_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-22TK/func/sub-22TK_task-restlight_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sume83fb0e8d49981e0b6922d4a8a893b77

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime19:29:13.742500
BandwidthPerPixelPhaseEncode40.064
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13D_LATEST_20130810
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20191031
DerivedVendorReportedEchoSpacing0.000780002
DeviceSerialNumber67007
DwellTime5.3e-06
EchoTime0.03
EchoTrainLength31
EffectiveEchoSpacing0.000390001
FlipAngle75
ImageOrientationPatientDICOM[0.999133, 0.0414006, 0.00450159, -0.0401293, 0.98603, -0.161662]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.211
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressPerth_Drive_100_London_Ontario_CA_N6A_5K8
InstitutionNameRobarts_Research_Institute
InstitutionalDepartmentNameCFMM
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectioni
PhaseEncodingSteps63
PhaseResolution1
PixelBandwidth1475
ProcedureStepDescriptionOwen_Naci
ProtocolNameResting_State_light_sed
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE64
RefLinesPE24
RepetitionTime2
SAR0.121103
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionResting_State_light_sed
SeriesNumber9
ShimSetting[5262, -6210, -3765, 402, 28, -118, 122, -6]
SliceThickness3
SliceTiming[1.92, 1.86, 1.8, 1.74, 1.68, 1.62, 1.56, 1.5, 1.44, 1.38, 1.32, 1.26, 1.2, 1.14, 1.08, 1.02, 0.96, 0.9, 0.84, 0.78, 0.72, 0.66, 0.6, 0.54, 0.48, 0.42, 0.36, 0.3, 0.24, 0.18, 0.12, 0.06, 0]
SoftwareVersionssyngo_MR_D13D
SpacingBetweenSlices3.75
StationNameAWP67007
TaskNamerestlight
TotalReadoutTime0.0245701
TxRefAmp322.304
dcmmetaaffine[[-2.9973974227905273, -0.12038791924715042, 0.04174353927373886, 101.47430419921875], [-0.12420179694890976, 2.958089828491211, -0.605029284954071, -64.37215423583984], [0.01350477896630764, 0.4849861264228821, 3.700634479522705, -41.04717254638672], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 33, 256]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.019105312500000003
aqi0.015159371796875
dummy_trs0
dvarsnstd20.913627419019587
dvarsstd1.1659498581176466
dvarsvstd1.0174589599607842
efc0.6066
fber1566.074
fdmean0.1264496099714659
fdnum13
fdperc5.078125
fwhmavg2.2800255555555555
fwhmx2.2993966666666665
fwhmy2.4495466666666665
fwhmz2.0911333333333335
gcor0.0221208
gsrx0.016262786462903023
gsry0.03660871088504791
sizet256
sizex64
sizey64
sizez33
snr3.751029271223852
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz3.75
summarybgk25.1237
summarybgmad11.2122
summarybgmean33.2867
summarybgmedian11.0
summarybgn88590.0
summarybgp052.0
summarybgp95144.0
summarybgstdv57.368
summaryfgk2.2283
summaryfgmad75.216
summaryfgmean418.0359
summaryfgmedian427.0
summaryfgn46578.0
summaryfgp05165.0
summaryfgp95577.0
summaryfgstdv113.8342
tsnr53.197387538384646
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