Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-22CY/figures/sub-22CY_task-restdeep_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-22CY/figures/sub-22CY_task-restdeep_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-22CY/figures/sub-22CY_task-restdeep_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-22CY/figures/sub-22CY_task-restdeep_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-22CY/figures/sub-22CY_task-restdeep_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-22CY/figures/sub-22CY_task-restdeep_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-22CY/figures/sub-22CY_task-restdeep_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-22CY/figures/sub-22CY_task-restdeep_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-22CY/func/sub-22CY_task-restdeep_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum720f3e5ac13969adca10df8be7ae0860

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime17:12:17.337500
BandwidthPerPixelPhaseEncode40.064
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13D_LATEST_20130810
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20191031
DerivedVendorReportedEchoSpacing0.000780002
DeviceSerialNumber67007
DwellTime5.3e-06
EchoTime0.03
EchoTrainLength31
EffectiveEchoSpacing0.000390001
FlipAngle75
ImageOrientationPatientDICOM[0.999984, -0.00335999, 0.00465511, 0.00349061, 0.999592, -0.0283416]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.211
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressPerth_Drive_100_London_Ontario_CA_N6A_5K8
InstitutionNameRobarts_Research_Institute
InstitutionalDepartmentNameCFMM
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectioni
PhaseEncodingSteps63
PhaseResolution1
PixelBandwidth1475
ProcedureStepDescriptionOwen_Naci
ProtocolNameResting_State_deep_sed
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE64
RefLinesPE24
RepetitionTime2
SAR0.132954
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionResting_State_deep_sed
SeriesNumber13
ShimSetting[5255, -6234, -3772, 399, 16, -109, -48, 23]
SliceThickness3
SliceTiming[1.92, 1.86, 1.8, 1.74, 1.68, 1.62, 1.56, 1.5, 1.44, 1.38, 1.32, 1.26, 1.2, 1.14, 1.08, 1.02, 0.96, 0.9, 0.84, 0.78, 0.72, 0.66, 0.6, 0.54, 0.48, 0.42, 0.36, 0.3, 0.24, 0.18, 0.12, 0.06, 0]
SoftwareVersionssyngo_MR_D13D
SpacingBetweenSlices3.75
StationNameAWP67007
TaskNamerestdeep
TotalReadoutTime0.0245701
TxRefAmp325.354
dcmmetaaffine[[-2.999950647354126, 0.010471844114363194, 0.017092429101467133, 92.07388305664062], [0.010079982690513134, 2.99877667427063, -0.10634028911590576, -77.77133178710938], [0.013965321704745293, 0.0850248858332634, 3.74845290184021, -17.93732452392578], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 33, 256]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.021027265625
aqi0.14169314101562502
dummy_trs0
dvarsnstd62.019258536588225
dvarsstd0.9711745402352939
dvarsvstd0.9790839621568626
efc0.5928
fber923.3593
fdmean1.0863791316312212
fdnum198
fdperc77.34375
fwhmavg2.4917371111111106
fwhmx2.502893333333333
fwhmy2.67051
fwhmz2.301808
gcor0.0120129
gsrx0.018828313797712326
gsry0.019867241382598877
sizet256
sizex64
sizey64
sizez33
snr3.9194098091099696
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz3.75
summarybgk39.1821
summarybgmad15.1503
summarybgmean30.4475
summarybgmedian15.0
summarybgn90340.0
summarybgp052.0
summarybgp95109.0
summarybgstdv47.8754
summaryfgk2.0374
summaryfgmad74.9554
summaryfgmean444.6294
summaryfgmedian460.0
summaryfgn44828.0
summaryfgp05178.0
summaryfgp95592.0
summaryfgstdv117.3633
tsnr14.768498508958146
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