Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-19SA/figures/sub-19SA_task-restdeep_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-19SA/figures/sub-19SA_task-restdeep_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-19SA/figures/sub-19SA_task-restdeep_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-19SA/figures/sub-19SA_task-restdeep_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-19SA/figures/sub-19SA_task-restdeep_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-19SA/figures/sub-19SA_task-restdeep_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-19SA/figures/sub-19SA_task-restdeep_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-19SA/figures/sub-19SA_task-restdeep_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-19SA/func/sub-19SA_task-restdeep_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum06fdd986523aeb80ba92710f9b8a0c53

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime19:54:44.602500
BandwidthPerPixelPhaseEncode40.064
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13D_LATEST_20130810
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20191031
DerivedVendorReportedEchoSpacing0.000780002
DeviceSerialNumber67007
DwellTime5.3e-06
EchoTime0.03
EchoTrainLength31
EffectiveEchoSpacing0.000390001
FlipAngle75
ImageOrientationPatientDICOM[0.999015, 0.0421427, 0.013895, -0.0401246, 0.991632, -0.122704]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.211
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressPerth_Drive_100_London_Ontario_CA_N6A_5K8
InstitutionNameRobarts_Research_Institute
InstitutionalDepartmentNameCFMM
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectioni
PhaseEncodingSteps63
PhaseResolution1
PixelBandwidth1475
ProcedureStepDescriptionOwen_Naci
ProtocolNameResting_State_deep_sed
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE64
RefLinesPE24
RepetitionTime2
SAR0.12892
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionResting_State_deep_sed
SeriesNumber16
ShimSetting[5280, -6156, -3661, 356, 40, 51, 23, 32]
SliceThickness3
SliceTiming[1.9175, 1.8575, 1.7975, 1.7375, 1.6775, 1.6175, 1.5575, 1.4975, 1.4375, 1.3775, 1.3175, 1.2575, 1.1975, 1.1375, 1.0775, 1.0175, 0.9575, 0.8975, 0.8375, 0.7775, 0.7175, 0.6575, 0.5975, 0.5375, 0.48, 0.42, 0.36, 0.3, 0.24, 0.18, 0.12, 0.06, 0]
SoftwareVersionssyngo_MR_D13D
SpacingBetweenSlices3.75
StationNameAWP67007
TaskNamerestdeep
TotalReadoutTime0.0245701
TxRefAmp288.366
dcmmetaaffine[[-2.9970450401306152, -0.12037375569343567, 0.07106153666973114, 95.74740600585938], [-0.1264280378818512, 2.974895715713501, -0.4575951397418976, -68.32610321044922], [0.04168485477566719, 0.3681113123893738, 3.7212977409362793, 21.92043685913086], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 33, 256]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.014373515625
aqi0.06631545312499999
dummy_trs0
dvarsnstd46.556605970941185
dvarsstd1.0962693103921564
dvarsvstd0.9913708802745097
efc0.5516
fber1886.3718
fdmean0.5456993338491732
fdnum210
fdperc82.03125
fwhmavg2.5521964444444447
fwhmx2.589773333333333
fwhmy2.8733733333333333
fwhmz2.193442666666667
gcor0.0169558
gsrx0.012666627764701843
gsry0.027523601427674294
sizet256
sizex64
sizey64
sizez33
snr3.4419710830172465
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz3.75
summarybgk24.1322
summarybgmad8.9651
summarybgmean28.9803
summarybgmedian10.0
summarybgn96631.0
summarybgp052.0
summarybgp95124.0
summarybgstdv49.1983
summaryfgk1.3203
summaryfgmad93.7514
summaryfgmean432.5012
summaryfgmedian452.0
summaryfgn38537.0
summaryfgp05139.0
summaryfgp95603.0
summaryfgstdv131.3184
tsnr19.89334880420938
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