Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-16RA/figures/sub-16RA_task-restlight_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-16RA/figures/sub-16RA_task-restlight_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-16RA/figures/sub-16RA_task-restlight_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-16RA/figures/sub-16RA_task-restlight_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-16RA/figures/sub-16RA_task-restlight_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-16RA/figures/sub-16RA_task-restlight_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-16RA/figures/sub-16RA_task-restlight_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-16RA/figures/sub-16RA_task-restlight_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-16RA/func/sub-16RA_task-restlight_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumaf45bbe77d508a9f1660c99d41a95307

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime17:29:13.242500
BandwidthPerPixelPhaseEncode40.064
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13D_LATEST_20130810
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20191031
DerivedVendorReportedEchoSpacing0.000780002
DeviceSerialNumber67007
DwellTime5.3e-06
EchoTime0.03
EchoTrainLength31
EffectiveEchoSpacing0.000390001
FlipAngle75
ImageOrientationPatientDICOM[0.999976, -0.00545748, -0.00416111, 0.00523591, 0.998658, -0.0515173]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.211
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressPerth_Drive_100_London_Ontario_CA_N6A_5K8
InstitutionNameRobarts-CFMM
InstitutionalDepartmentNameCFMM
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectioni
PhaseEncodingSteps63
PhaseResolution1
PixelBandwidth1475
ProcedureStepDescriptionOwen_Naci
ProtocolNameResting_State_light_sed
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE64
RefLinesPE24
RepetitionTime2
SAR0.0815641
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionResting_State_light_sed
SeriesNumber10
ShimSetting[5239, -6199, -3811, 375, 54, -181, 73, 34]
SliceThickness3
SliceTiming[1.92, 1.86, 1.8, 1.74, 1.68, 1.62, 1.56, 1.5, 1.44, 1.38, 1.32, 1.26, 1.2, 1.14, 1.08, 1.02, 0.96, 0.9, 0.84, 0.78, 0.72, 0.66, 0.6, 0.54, 0.48, 0.42, 0.36, 0.3, 0.24, 0.18, 0.12, 0.06, 0]
SoftwareVersionssyngo_MR_D13D
SpacingBetweenSlices3.75
StationNameAWP67007
TaskNamerestlight
TotalReadoutTime0.0245701
TxRefAmp277.962
dcmmetaaffine[[-2.999929428100586, 0.01570773869752884, -0.016637537628412247, 87.11847686767578], [0.01637244038283825, 2.9959750175476074, -0.1931036412715912, -77.91716766357422], [-0.012483314611017704, 0.1545519083738327, 3.744987964630127, -41.56442642211914], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 33, 256]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0009812109375
aqi0.0043229317578125
dummy_trs0
dvarsnstd25.509800727921583
dvarsstd1.3884248146274518
dvarsvstd1.0042436079999992
efc0.5974
fber2126.7979
fdmean0.11728636534385889
fdnum0
fdperc0.0
fwhmavg2.0781993333333335
fwhmx2.0826166666666666
fwhmy2.261066666666667
fwhmz1.8909146666666667
gcor0.0291305
gsrx0.014557932503521442
gsry0.045071642845869064
sizet256
sizex64
sizey64
sizez33
snr3.887765656309752
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz3.75
summarybgk19.7952
summarybgmad10.1697
summarybgmean35.2997
summarybgmedian10.0
summarybgn90259.0
summarybgp052.0
summarybgp95151.0
summarybgstdv60.026
summaryfgk2.4428
summaryfgmad83.0141
summaryfgmean465.877
summaryfgmedian469.0
summaryfgn44909.0
summaryfgp05223.0
summaryfgp95648.0
summaryfgstdv120.6335
tsnr87.36792507534847
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