Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-16RA/figures/sub-16RA_task-audiodeep_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-16RA/figures/sub-16RA_task-audiodeep_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-16RA/figures/sub-16RA_task-audiodeep_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-16RA/figures/sub-16RA_task-audiodeep_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-16RA/figures/sub-16RA_task-audiodeep_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-16RA/figures/sub-16RA_task-audiodeep_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-16RA/figures/sub-16RA_task-audiodeep_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-16RA/figures/sub-16RA_task-audiodeep_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-16RA/func/sub-16RA_task-audiodeep_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumc99e21a821a4b0b41b4d287f5e9b795a

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime17:48:43.765000
BandwidthPerPixelPhaseEncode40.064
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13D_LATEST_20130810
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20191031
DerivedVendorReportedEchoSpacing0.000780002
DeviceSerialNumber67007
DwellTime5.3e-06
EchoTime0.03
EchoTrainLength31
EffectiveEchoSpacing0.000390001
FlipAngle75
ImageOrientationPatientDICOM[0.999976, -0.00545748, -0.00416111, 0.00523591, 0.998658, -0.0515173]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.211
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressPerth_Drive_100_London_Ontario_CA_N6A_5K8
InstitutionNameRobarts-CFMM
InstitutionalDepartmentNameCFMM
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectioni
PhaseEncodingSteps63
PhaseResolution1
PixelBandwidth1475
ProcedureStepDescriptionOwen_Naci
ProtocolNametaken_full_sed
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE64
RefLinesPE24
RepetitionTime2
SAR0.0814128
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptiontaken_full_sed
SeriesNumber12
ShimSetting[5239, -6199, -3811, 375, 54, -181, 73, 34]
SliceThickness3
SliceTiming[1.92, 1.86, 1.8, 1.74, 1.68, 1.62, 1.56, 1.5, 1.44, 1.38, 1.32, 1.26, 1.2, 1.14, 1.08, 1.02, 0.96, 0.9, 0.84, 0.78, 0.72, 0.66, 0.6, 0.54, 0.48, 0.42, 0.36, 0.3, 0.24, 0.18, 0.12, 0.06, 0]
SoftwareVersionssyngo_MR_D13D
SpacingBetweenSlices3.75
StationNameAWP67007
TaskNameaudio
TotalReadoutTime0.0245701
TxRefAmp277.962
dcmmetaaffine[[-2.999929428100586, 0.01570773869752884, -0.016637537628412247, 87.11847686767578], [0.01637244038283825, 2.9959750175476074, -0.1931036412715912, -77.91716766357422], [-0.012483314611017704, 0.1545519083738327, 3.744987964630127, -41.56442642211914], [0.0, 0.0, 0.0, 1.0]]
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dcmmetashape[64, 64, 33, 155]
dcmmetaslice_dim2
dcmmetaversion0.6
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summarybgmad10.1965
summarybgmean35.5613
summarybgmedian10.0
summarybgn90231.0
summarybgp052.0
summarybgp95153.0
summarybgstdv60.455
summaryfgk2.4168
summaryfgmad82.9205
summaryfgmean465.9769
summaryfgmedian469.0
summaryfgn44937.0
summaryfgp05216.0
summaryfgp95651.0
summaryfgstdv122.0181
tsnr91.691466701217
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