Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-13CA/figures/sub-13CA_task-restdeep_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-13CA/figures/sub-13CA_task-restdeep_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-13CA/figures/sub-13CA_task-restdeep_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-13CA/figures/sub-13CA_task-restdeep_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-13CA/figures/sub-13CA_task-restdeep_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-13CA/figures/sub-13CA_task-restdeep_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-13CA/figures/sub-13CA_task-restdeep_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-13CA/figures/sub-13CA_task-restdeep_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-13CA/func/sub-13CA_task-restdeep_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumf0f50681c65fee5cae9244ae2eb34a50

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime17:23:29.720000
BandwidthPerPixelPhaseEncode40.064
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13D_LATEST_20130810
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20191031
DerivedVendorReportedEchoSpacing0.000780002
DeviceSerialNumber67007
DwellTime5.3e-06
EchoTime0.03
EchoTrainLength31
EffectiveEchoSpacing0.000390001
FlipAngle75
ImageOrientationPatientDICOM[0.999026, 0.0399292, 0.0187867, -0.040125, 0.999143, 0.0101666]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.211
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressPerth_Drive_100_London_Ontario_CA_N6A_5K8
InstitutionNameRobarts-CFMM
InstitutionalDepartmentNameCFMM
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectioni
PhaseEncodingSteps63
PhaseResolution1
PixelBandwidth1475
ProcedureStepDescriptionOwen_Naci
ProtocolNameResting_State_deep_sed
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE64
RefLinesPE24
RepetitionTime2
SAR0.090657
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionResting_State_deep_sed
SeriesNumber13
ShimSetting[5236, -6206, -4093, 291, 48, -67, 40, 78]
SliceThickness3
SliceTiming[1.92, 1.86, 1.8, 1.74, 1.68, 1.62, 1.56, 1.5, 1.44, 1.38, 1.32, 1.26, 1.2, 1.14, 1.08, 1.02, 0.96, 0.9, 0.84, 0.78, 0.72, 0.66, 0.6, 0.54, 0.48, 0.42, 0.36, 0.3, 0.24, 0.18, 0.12, 0.06, 0]
SoftwareVersionssyngo_MR_D13D
SpacingBetweenSlices3.75
StationNameAWP67007
TaskNamerestdeep
TotalReadoutTime0.0245701
TxRefAmp260.962
dcmmetaaffine[[-2.997077703475952, -0.12037507444620132, 0.06886753439903259, 93.86138153076172], [-0.11978748440742493, 2.9974288940429688, 0.04091459512710571, -69.20264434814453], [0.056360166519880295, -0.030499931424856186, 3.7491443157196045, -51.327613830566406], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 33, 256]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0008711718749999999
aqi0.0053761283203125005
dummy_trs0
dvarsnstd26.27316485392158
dvarsstd1.3802869824313724
dvarsvstd0.9973708239999999
efc0.5654
fber3207.3596
fdmean0.15027292259559996
fdnum59
fdperc23.046875
fwhmavg2.129102666666667
fwhmx2.246236666666667
fwhmy2.1596366666666666
fwhmz1.9814346666666667
gcor0.0266846
gsrx0.024789633229374886
gsry0.011324034072458744
sizet256
sizex64
sizey64
sizez33
snr4.141711527680922
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz3.75
summarybgk31.1835
summarybgmad7.0771
summarybgmean25.8564
summarybgmedian8.0
summarybgn92825.0
summarybgp052.0
summarybgp95108.0
summarybgstdv50.5676
summaryfgk3.199
summaryfgmad77.7092
summaryfgmean457.4654
summaryfgmedian465.0
summaryfgn42343.0
summaryfgp05223.0
summaryfgp95606.0
summaryfgstdv112.2711
tsnr86.97714423760772
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