Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-10JR/figures/sub-10JR_task-restdeep_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-10JR/figures/sub-10JR_task-restdeep_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-10JR/figures/sub-10JR_task-restdeep_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-10JR/figures/sub-10JR_task-restdeep_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-10JR/figures/sub-10JR_task-restdeep_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-10JR/figures/sub-10JR_task-restdeep_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-10JR/figures/sub-10JR_task-restdeep_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-10JR/figures/sub-10JR_task-restdeep_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-10JR/func/sub-10JR_task-restdeep_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum73e6bbd0919be9f660d46f0e10ab72fb

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime17:10:28.057500
BandwidthPerPixelPhaseEncode40.064
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13D_LATEST_20130810
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20191031
DerivedVendorReportedEchoSpacing0.000780002
DeviceSerialNumber67007
DwellTime5.3e-06
EchoTime0.03
EchoTrainLength31
EffectiveEchoSpacing0.000390001
FlipAngle75
ImageOrientationPatientDICOM[0.999191, 0.0400351, 0.00385328, -0.0401317, 0.998758, 0.0295302]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.211
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressPerth_Drive_100_London_Ontario_CA_N6A_5K8
InstitutionNameRobarts-CFMM
InstitutionalDepartmentNameCFMM
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectioni
PhaseEncodingSteps63
PhaseResolution1
PixelBandwidth1475
ProcedureStepDescriptionOwen_Naci
ProtocolNameResting_State_deep_sed
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE64
RefLinesPE24
RepetitionTime2
SAR0.0907574
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionResting_State_deep_sed
SeriesNumber19
ShimSetting[5245, -6181, -3804, 488, -41, 20, 22, 9]
SliceThickness3
SliceTiming[1.92, 1.86, 1.8, 1.74, 1.68, 1.62, 1.56, 1.5, 1.44, 1.38, 1.32, 1.26, 1.2, 1.14, 1.08, 1.02, 0.96, 0.9, 0.84, 0.78, 0.72, 0.66, 0.6, 0.54, 0.48, 0.42, 0.36, 0.3, 0.24, 0.18, 0.12, 0.06, 0]
SoftwareVersionssyngo_MR_D13D
SpacingBetweenSlices3.75
StationNameAWP67007
TaskNamerestdeep
TotalReadoutTime0.0245701
TxRefAmp271.966
dcmmetaaffine[[-2.997572422027588, -0.12039495259523392, 0.009998445399105549, 95.10115814208984], [-0.12010534852743149, 2.9962737560272217, 0.11122836172580719, -83.29228973388672], [0.011559844017028809, -0.08859045803546906, 3.7483365535736084, -38.92499923706055], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 33, 256]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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aor0.0020471484375
aqi0.010895831328125
dummy_trs0
dvarsnstd42.240535145254896
dvarsstd1.1961594527450976
dvarsvstd0.9674377608627441
efc0.5825
fber2032.2605
fdmean0.2579673989145629
fdnum141
fdperc55.078125
fwhmavg2.249372888888889
fwhmx2.292736666666667
fwhmy2.4600033333333333
fwhmz1.9953786666666666
gcor0.00454791
gsrx0.0075272731482982635
gsry0.037005193531513214
sizet256
sizex64
sizey64
sizez33
snr3.6386446268386368
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz3.75
summarybgk24.8986
summarybgmad9.5558
summarybgmean27.1326
summarybgmedian10.0
summarybgn90302.0
summarybgp052.0
summarybgp95111.0
summarybgstdv47.0967
summaryfgk1.7952
summaryfgmad86.3934
summaryfgmean424.8138
summaryfgmedian440.0
summaryfgn44866.0
summaryfgp05149.0
summaryfgp95581.0
summaryfgstdv120.9228
tsnr61.7220170754008
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