Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-08BC/figures/sub-08BC_task-restdeep_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-08BC/figures/sub-08BC_task-restdeep_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-08BC/figures/sub-08BC_task-restdeep_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-08BC/figures/sub-08BC_task-restdeep_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-08BC/figures/sub-08BC_task-restdeep_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-08BC/figures/sub-08BC_task-restdeep_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-08BC/figures/sub-08BC_task-restdeep_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-08BC/figures/sub-08BC_task-restdeep_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-08BC/func/sub-08BC_task-restdeep_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum505e96e214a827c3f53f2762eec64b9f

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime19:28:11.140000
BandwidthPerPixelPhaseEncode40.064
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13D_LATEST_20130810
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20191031
DerivedVendorReportedEchoSpacing0.000780002
DeviceSerialNumber67007
DwellTime5.3e-06
EchoTime0.03
EchoTrainLength31
EffectiveEchoSpacing0.000390001
FlipAngle75
ImageOrientationPatientDICOM[0.999945, -0.00811917, 0.00659954, 0.00872639, 0.995159, -0.0978935]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.211
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressPerth_Drive_100_London_Ontario_CA_N6A_5K8
InstitutionNameRobarts_Research_Institute
InstitutionalDepartmentNameCFMM
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectioni
PhaseEncodingSteps63
PhaseResolution1
PixelBandwidth1475
ProcedureStepDescriptionOwen_Naci
ProtocolNameResting_State_deep_sed
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE64
RefLinesPE24
RepetitionTime2
SAR0.0989456
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionResting_State_deep_sed
SeriesNumber13
ShimSetting[5228, -6231, -3842, 426, 26, -407, 171, 65]
SliceThickness3
SliceTiming[1.92, 1.86, 1.8, 1.74, 1.68, 1.62, 1.56, 1.5, 1.44, 1.38, 1.32, 1.26, 1.2, 1.14, 1.08, 1.02, 0.96, 0.9, 0.84, 0.78, 0.72, 0.66, 0.6, 0.54, 0.48, 0.42, 0.36, 0.3, 0.24, 0.18, 0.12, 0.06, 0]
SoftwareVersionssyngo_MR_D13D
SpacingBetweenSlices3.75
StationNameAWP67007
TaskNamerestdeep
TotalReadoutTime0.0245701
TxRefAmp265.526
dcmmetaaffine[[-2.999835729598999, 0.026179170235991478, 0.021647922694683075, 93.91796112060547], [0.02435750514268875, 2.985476016998291, -0.367296427488327, -70.7354736328125], [0.019798630848526955, 0.29368045926094055, 3.7319061756134033, -62.25905990600586], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 33, 256]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0033302343750000003
aqi0.026738776875000002
dummy_trs0
dvarsnstd60.16140461341179
dvarsstd1.2214427551764706
dvarsvstd0.981520633764706
efc0.6167
fber1702.6871
fdmean0.6332297702928711
fdnum255
fdperc99.609375
fwhmavg2.212097820700189
fwhmx2.2616533333333333
fwhmy2.3493066666666667
fwhmz2.025333462100567
gcor0.0926848
gsrx0.01660812459886074
gsry0.03364903852343559
sizet256
sizex64
sizey64
sizez33
snr3.911300556282558
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz3.749999761581421
summarybgk12.2404
summarybgmad8.6234
summarybgmean33.5352
summarybgmedian9.0
summarybgn88976.0
summarybgp052.0
summarybgp95150.0
summarybgstdv53.5952
summaryfgk2.1868
summaryfgmad70.9941
summaryfgmean370.9036
summaryfgmedian378.0
summaryfgn46192.0
summaryfgp05165.0
summaryfgp95501.0
summaryfgstdv96.642
tsnr33.945003532920964
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