Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-04HD/figures/sub-04HD_task-restlight_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-04HD/figures/sub-04HD_task-restlight_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-04HD/figures/sub-04HD_task-restlight_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-04HD/figures/sub-04HD_task-restlight_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-04HD/figures/sub-04HD_task-restlight_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-04HD/figures/sub-04HD_task-restlight_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-04HD/figures/sub-04HD_task-restlight_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-04HD/figures/sub-04HD_task-restlight_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-04HD/func/sub-04HD_task-restlight_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum96ba348ad0230f62ac5aaa90c713279d

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime10:23:42.222500
BandwidthPerPixelPhaseEncode40.064
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13D_LATEST_20130810
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20191031
DerivedVendorReportedEchoSpacing0.000780002
DeviceSerialNumber67007
DwellTime5.3e-06
EchoTime0.03
EchoTrainLength31
EffectiveEchoSpacing0.000390001
FlipAngle75
ImageOrientationPatientDICOM[0.999077, 0.0208633, -0.0375509, -0.0226722, 0.99857, -0.0484084]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.211
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressPerth_Drive_100_London_Ontario_CA_N6A_5K8
InstitutionNameRobarts-CFMM
InstitutionalDepartmentNameCFMM
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectioni
PhaseEncodingSteps63
PhaseResolution1
PixelBandwidth1475
ProcedureStepDescriptionOwen_Naci
ProtocolNameResting_State
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE64
RefLinesPE24
RepetitionTime2
SAR0.141895
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionResting_State
SeriesNumber11
ShimSetting[5235, -6122, -3911, 329, -8, 162, 111, -51]
SliceThickness3
SliceTiming[1.92, 1.86, 1.8, 1.74, 1.68, 1.62, 1.56, 1.5, 1.44, 1.38, 1.32, 1.26, 1.2, 1.14, 1.08, 1.02, 0.96, 0.9, 0.84, 0.78, 0.72, 0.66, 0.6, 0.54, 0.48, 0.42, 0.36, 0.3, 0.24, 0.18, 0.12, 0.06, 0]
SoftwareVersionssyngo_MR_D13D
SpacingBetweenSlices3.75
StationNameAWP67007
TaskNamerest
TotalReadoutTime0.0245701
TxRefAmp280.503
dcmmetaaffine[[-2.9972307682037354, -0.06801667809486389, -0.13682721555233002, 102.08744049072266], [-0.06259004771709442, 2.995710849761963, -0.18455646932125092, -69.05018615722656], [-0.11265271157026291, 0.1452251374721527, 3.7429556846618652, -32.62803268432617], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 33, 256]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.012662187499999998
aqi0.07305096601562501
dummy_trs0
dvarsnstd45.939000241764695
dvarsstd1.046071757764706
dvarsvstd0.9739046794509804
efc0.533
fber3137.3831
fdmean0.5901246136646968
fdnum189
fdperc73.828125
fwhmavg2.1982346666666666
fwhmx2.205643333333333
fwhmy2.4369433333333332
fwhmz1.9521173333333333
gcor0.0513647
gsrx-0.0012745287967845798
gsry0.03880272060632706
sizet256
sizex64
sizey64
sizez33
snr3.8584504248927733
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz3.75
summarybgk37.9472
summarybgmad5.5134
summarybgmean19.1617
summarybgmedian7.0
summarybgn97625.0
summarybgp052.0
summarybgp9578.0
summarybgstdv33.3769
summaryfgk2.2609
summaryfgmad56.9412
summaryfgmean372.8953
summaryfgmedian390.0
summaryfgn37543.0
summaryfgp05132.0
summaryfgp95496.0
summaryfgstdv101.0755
tsnr25.74097032775171
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