Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-04HD/figures/sub-04HD_task-restdeep_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-04HD/figures/sub-04HD_task-restdeep_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-04HD/figures/sub-04HD_task-restdeep_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-04HD/figures/sub-04HD_task-restdeep_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-04HD/figures/sub-04HD_task-restdeep_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-04HD/figures/sub-04HD_task-restdeep_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-04HD/figures/sub-04HD_task-restdeep_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-04HD/figures/sub-04HD_task-restdeep_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-04HD/func/sub-04HD_task-restdeep_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum06cb978f4540858cde45e70beedadd5a

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime10:52:48.370000
BandwidthPerPixelPhaseEncode40.064
BaseResolution64
BodyPartExaminedBRAIN
ConsistencyInfoN4_VD13D_LATEST_20130810
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20191031
DerivedVendorReportedEchoSpacing0.000780002
DeviceSerialNumber67007
DwellTime5.3e-06
EchoTime0.03
EchoTrainLength31
EffectiveEchoSpacing0.000390001
FlipAngle75
ImageOrientationPatientDICOM[0.999077, 0.0208633, -0.0375509, -0.0226722, 0.99857, -0.0484084]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.211
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressPerth_Drive_100_London_Ontario_CA_N6A_5K8
InstitutionNameRobarts-CFMM
InstitutionalDepartmentNameCFMM
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectioni
PhaseEncodingSteps63
PhaseResolution1
PixelBandwidth1475
ProcedureStepDescriptionOwen_Naci
ProtocolNameResting_State
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE64
RefLinesPE24
RepetitionTime2
SAR0.141895
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionResting_State
SeriesNumber15
ShimSetting[5235, -6122, -3911, 329, -8, 162, 111, -51]
SliceThickness3
SliceTiming[1.9175, 1.8575, 1.7975, 1.7375, 1.6775, 1.6175, 1.5575, 1.4975, 1.4375, 1.3775, 1.3175, 1.2575, 1.1975, 1.1375, 1.0775, 1.0175, 0.9575, 0.8975, 0.8375, 0.7775, 0.7175, 0.66, 0.6, 0.54, 0.48, 0.42, 0.36, 0.3, 0.24, 0.18, 0.12, 0.06, 0]
SoftwareVersionssyngo_MR_D13D
SpacingBetweenSlices3.75
StationNameAWP67007
TaskNamerest
TotalReadoutTime0.0245701
TxRefAmp280.503
dcmmetaaffine[[-2.9972307682037354, -0.06801667809486389, -0.13682721555233002, 102.08744049072266], [-0.06259004771709442, 2.995710849761963, -0.18455646932125092, -69.05018615722656], [-0.11265271157026291, 0.1452251374721527, 3.7429556846618652, -32.62803268432617], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 33, 256]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0372776171875
aqi0.23041936484375
dummy_trs0
dvarsnstd71.48306265419613
dvarsstd1.0321389341176472
dvarsvstd1.078438377254901
efc0.544
fber2650.0359
fdmean1.3378997723891948
fdnum225
fdperc87.890625
fwhmavg2.6398444444444444
fwhmx2.554466666666667
fwhmy2.7765066666666667
fwhmz2.58856
gcor0.0176138
gsrx-0.0035973978228867054
gsry0.0422455295920372
sizet256
sizex64
sizey64
sizez33
snr4.278720153793204
spacingtr2.0
spacingx3.0
spacingy3.0
spacingz3.75
summarybgk21.3972
summarybgmad6.8744
summarybgmean21.8083
summarybgmedian8.0
summarybgn98064.0
summarybgp052.0
summarybgp9590.0
summarybgstdv35.6905
summaryfgk2.4231
summaryfgmad50.4693
summaryfgmean370.2636
summaryfgmedian388.0
summaryfgn37104.0
summaryfgp05159.0
summaryfgp95478.0
summaryfgstdv90.6801
tsnr12.385047896299511
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