Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-047EPKL013053/figures/sub-047EPKL013053_ses-2_task-read_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-047EPKL013053/figures/sub-047EPKL013053_ses-2_task-read_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-047EPKL013053/figures/sub-047EPKL013053_ses-2_task-read_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-047EPKL013053/figures/sub-047EPKL013053_ses-2_task-read_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-047EPKL013053/figures/sub-047EPKL013053_ses-2_task-read_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-047EPKL013053/figures/sub-047EPKL013053_ses-2_task-read_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-047EPKL013053/figures/sub-047EPKL013053_ses-2_task-read_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-047EPKL013053/figures/sub-047EPKL013053_ses-2_task-read_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-047EPKL013053/ses-2/func/sub-047EPKL013053_ses-2_task-read_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum8165e6f8065a6cce8c32e8a137ab19f1

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime14:28:20.050000
BandwidthPerPixelPhaseEncode24.038
BaseResolution64
BodyPartExaminedHEAD
ConsistencyInfoN4_VD13A_LATEST_20120616
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20181125 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000650012
DeviceSerialNumber45250
DwellTime4.6e-06
EchoTime0.033
EchoTrainLength64
EffectiveEchoSpacing0.000650012
FlipAngle90
ImageOrientationPatientDICOM[0.999316, 0.0369926, -1.55225e-05, -0.0366433, 0.98982, -0.137529]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.22
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressKopernikusstr._26_Graz_Graz_AT_8010
InstitutionNameKFU
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameSkyra
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1700
ProcedureStepDescriptionKFU_Entw-Psy
ProtocolNamefMRI_1
PulseSequenceDetails%SiemensSeq%_ep2d_pace
ReceiveCoilActiveElementsHE1-4
ReceiveCoilNameHeadNeck_20
ReconMatrixPE64
RepetitionTime2.34
SAR0.155833
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionfMRI_1
SeriesNumber2
ShimSetting[-1616, -3666, -4307, 437, 665, 99, -185, -381]
SliceThickness3
SliceTiming[2.25, 2.1825, 2.115, 2.045, 1.9775, 1.91, 1.8425, 1.7725, 1.705, 1.6375, 1.5675, 1.5, 1.4325, 1.3625, 1.295, 1.2275, 1.16, 1.09, 1.0225, 0.955, 0.885, 0.8175, 0.75, 0.6825, 0.6125, 0.545, 0.4775, 0.4075, 0.34, 0.2725, 0.205, 0.135, 0.0675, 0]
SoftwareVersionssyngo_MR_D13
SpacingBetweenSlices3.3
StationNameFBMTMR1
TaskNameread
TotalReadoutTime0.0409508
TxRefAmp346.015
dcmmetaaffine[[-2.9979465007781982, -0.10992977023124695, 0.01673826575279236, 102.05625915527344], [-0.11097791790962219, 2.969459056854248, -0.4535374045372009, -105.63948059082031], [-4.656748933484778e-05, 0.412587434053421, 3.2686424255371094, -29.558385848999023], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 34, 130]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.007934769230769231
aqi0.017380319769230768
dummy_trs0
dvarsnstd38.148386770310076
dvarsstd1.360949800930233
dvarsvstd1.1174430458914733
efc0.5624
fber1755.8646
fdmean0.44744267428824075
fdnum100
fdperc76.92307692307692
fwhmavg1.9257887964151508
fwhmx1.89191
fwhmy2.1131533333333334
fwhmz1.7723030559121198
gcor0.0302994
gsrx0.008791345171630383
gsry0.027560513466596603
sizet130
sizex64
sizey64
sizez34
snr4.949315389373711
spacingtr2.3399999141693115
spacingx3.0
spacingy3.0
spacingz3.299999952316284
summarybgk41.1766
summarybgmad12.1801
summarybgmean49.0612
summarybgmedian23.0
summarybgn96881.0
summarybgp0512.0
summarybgp95174.0
summarybgstdv94.2498
summaryfgk3.5729
summaryfgmad145.2494
summaryfgmean920.5875
summaryfgmedian944.0
summaryfgn42383.0
summaryfgp05533.0
summaryfgp951157.0
summaryfgstdv190.7312
tsnr51.136924646329135
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