Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-04_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-04_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-04_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-04_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-04_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-04_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-65/figures/sub-65_task-backtothefuture_run-04_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-04_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-65/func/sub-65_task-backtothefuture_run-04_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum7f4c9bee91c849f98be7003aaf6b115e

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime19:22:50.790000
BandwidthPerPixelPhaseEncode19.531
BaseResolution64
CogAtlasIDhttp://www.cognitiveatlas.org/task/id/tsk_jbg1oF4D9OTkO/
CoilStringC:HEA;HEP
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.00080001
DeviceSerialNumber26099
DwellTime5.3e-06
EchoTime0.0548
EffectiveEchoSpacing0.00080001
FlipAngle75
ImageCommentsUnaliased_MB4_PE3_LB_SENSE1
ImageOrientationPatientDICOM[1, 0, 0, 0, 0.960294, -0.278991]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency63.6396
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressBedford_Way_26_London_London_GB_WC1H_0AP
InstitutionNameUniversity_College
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength1.5
ManufacturerSiemens
ManufacturersModelNameAvanto
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1474
ProcedureStepDescriptionucl_bbk_Jeremy
ProtocolNameEcL4-3.2m-40-1474-1s-55e
PulseSequenceDetails%CustomerSeq%_cmrr_mbep2d_bold
ReceiveCoilName32Ch_Head
ReconMatrixPE64
RepetitionTime1
SAR0.0359739
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_64
SequenceVariantSK_SS
SeriesDescriptionEcL4-3.2m-40-1474-1s-55e
SeriesNumber9
ShimSetting[140, -93, 352, 1096, -193, 178, 70, 105]
SliceThickness3.2
SliceTiming[0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices3.2
StationNameMRC26099
TaskNamebacktothefuture
TotalReadoutTime0.0504006
TxRefAmp212.575
dcmmetaaffine[[-3.203125, 0.0, 0.0, 102.5], [0.0, 3.0759406089782715, -0.8927715420722961, -76.20177459716797], [0.0, 0.8936433792114258, 3.072939872741699, -57.2620735168457], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 40, 141]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0017187943262411344
aqi0.0024117068085106382
dummy_trs0
dvarsnstd29.311536679785707
dvarsstd1.179512513857143
dvarsvstd1.0232177155
efc0.4675
fber43381.8984
fdmean0.17239514686146434
fdnum54
fdperc38.297872340425535
fwhmavg3.1615674045082236
fwhmx3.0651879024390243
fwhmy3.1532956097560976
fwhmz3.2662187013295485
gcor0.00858326
gsrx0.000439370603999123
gsry0.02274489216506481
sizet141
sizex64
sizey64
sizez40
snr2.5545685647326652
spacingtr1.0
spacingx3.203125
spacingy3.203125
spacingz3.200000047683716
summarybgk40.534
summarybgmad1.6824
summarybgmean15.4188
summarybgmedian2.0
summarybgn123253.0
summarybgp051.0
summarybgp9578.0
summarybgstdv37.7892
summaryfgk-0.0255
summaryfgmad157.1873
summaryfgmean431.0038
summaryfgmedian422.0
summaryfgn40587.0
summaryfgp05147.0
summaryfgp95713.0
summaryfgstdv165.1922
tsnr60.35913082398474
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