Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-65/figures/sub-65_task-backtothefuture_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-65/figures/sub-65_task-backtothefuture_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-65/func/sub-65_task-backtothefuture_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum9012f722b3a6c2ab1315ed8b0ee80e26

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime17:30:53.117500
BandwidthPerPixelPhaseEncode19.531
BaseResolution64
CogAtlasIDhttp://www.cognitiveatlas.org/task/id/tsk_jbg1oF4D9OTkO/
CoilStringC:HEA;HEP
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.00080001
DeviceSerialNumber26099
DwellTime5.3e-06
EchoTime0.0548
EffectiveEchoSpacing0.00080001
FlipAngle75
ImageCommentsUnaliased_MB4_PE3_LB_SENSE1
ImageOrientationPatientDICOM[1, 0, 0, 0, 0.960294, -0.278991]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency63.6396
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressBedford_Way_26_London_London_GB_WC1H_0AP
InstitutionNameUniversity_College
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength1.5
ManufacturerSiemens
ManufacturersModelNameAvanto
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1474
ProcedureStepDescriptionucl_bbk_Jeremy
ProtocolNameEcL4-3.2m-40-1474-1s-55e
PulseSequenceDetails%CustomerSeq%_cmrr_mbep2d_bold
ReceiveCoilName32Ch_Head
ReconMatrixPE64
RepetitionTime1
SAR0.0359739
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_64
SequenceVariantSK_SS
SeriesDescriptionEcL4-3.2m-40-1474-1s-55e
SeriesNumber3
ShimSetting[140, -93, 352, 1096, -193, 178, 70, 105]
SliceThickness3.2
SliceTiming[0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices3.2
StationNameMRC26099
TaskNamebacktothefuture
TotalReadoutTime0.0504006
TxRefAmp212.575
dcmmetaaffine[[-3.203125, 0.0, 0.0, 102.5], [0.0, 3.0759406089782715, -0.8927715420722961, -76.20177459716797], [0.0, 0.8936433792114258, 3.072939872741699, -57.2620735168457], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 40, 314]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.01961888178913738
aqi0.03165183910543131
dummy_trs1
dvarsnstd34.18747124304488
dvarsstd1.0747403409935896
dvarsvstd1.0464339037500001
efc0.4674
fber44751.2891
fdmean0.24217770945298683
fdnum98
fdperc31.309904153354633
fwhmavg3.556527430580875
fwhmx3.4380800000000002
fwhmy3.4855960975609754
fwhmz3.7459061941816483
gcor0.00640097
gsrx0.00017664636834524572
gsry0.022076161578297615
sizet313
sizex64
sizey64
sizez40
snr2.601307109591363
spacingtr1.0
spacingx3.203125
spacingy3.203125
spacingz3.200000047683716
summarybgk67.566
summarybgmad1.6673
summarybgmean15.4527
summarybgmedian2.0
summarybgn123301.0
summarybgp051.0
summarybgp9576.0
summarybgstdv41.186
summaryfgk-0.0667
summaryfgmad155.1522
summaryfgmean427.7497
summaryfgmedian420.0
summaryfgn40539.0
summaryfgp05148.0
summaryfgp95702.0
summaryfgstdv161.4553
tsnr29.046706784516573
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