Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-63/figures/sub-63_task-backtothefuture_run-02_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-63/figures/sub-63_task-backtothefuture_run-02_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-63/figures/sub-63_task-backtothefuture_run-02_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-63/figures/sub-63_task-backtothefuture_run-02_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-63/figures/sub-63_task-backtothefuture_run-02_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-63/figures/sub-63_task-backtothefuture_run-02_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-63/figures/sub-63_task-backtothefuture_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-63/figures/sub-63_task-backtothefuture_run-02_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-63/func/sub-63_task-backtothefuture_run-02_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum11181e3e9cec12100e059a300d1a829d

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime18:03:39.470000
BandwidthPerPixelPhaseEncode19.531
BaseResolution64
CogAtlasIDhttp://www.cognitiveatlas.org/task/id/tsk_jbg1oF4D9OTkO/
CoilStringC:HEA;HEP
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.00080001
DeviceSerialNumber26099
DwellTime5.3e-06
EchoTime0.0548
EffectiveEchoSpacing0.00080001
FlipAngle75
ImageCommentsUnaliased_MB4_PE3_LB_SENSE1
ImageOrientationPatientDICOM[1, -2e-16, 0, 2e-16, 0.948324, -0.317305]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency63.6394
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressBedford_Way_26_London_London_GB_WC1H_0AP
InstitutionNameUniversity_College
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength1.5
ManufacturerSiemens
ManufacturersModelNameAvanto
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1474
ProcedureStepDescriptionucl_bbk_Jeremy
ProtocolNameEcL4-3.2m-40-1474-1s-55e
PulseSequenceDetails%CustomerSeq%_cmrr_mbep2d_bold
ReceiveCoilName32Ch_Head
ReconMatrixPE64
RepetitionTime1
SAR0.0507349
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_64
SequenceVariantSK_SS
SeriesDescriptionEcL4-3.2m-40-1474-1s-55e
SeriesNumber5
ShimSetting[172, -82, 343, 732, -111, -88, -619, 131]
SliceThickness3.2
SliceTiming[0, 0.7025, 0.4025, 0.1025, 0.805, 0.5025, 0.2025, 0.905, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1025, 0.805, 0.5025, 0.2025, 0.905, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1025, 0.805, 0.5025, 0.2025, 0.905, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1025, 0.805, 0.5025, 0.2025, 0.905, 0.6025, 0.3025]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices3.2
StationNameMRC26099
TaskNamebacktothefuture
TotalReadoutTime0.0504006
TxRefAmp215.536
dcmmetaaffine[[-3.203125, 6.40624994052057e-16, -2.0307499766880583e-16, 102.5], [6.40624994052057e-16, 3.0375990867614746, -1.015375018119812, -70.73380279541016], [0.0, 1.0163664817810059, 3.0346357822418213, -54.65370559692383], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 40, 705]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.005438099290780141
aqi0.06584108619858155
dummy_trs0
dvarsnstd35.550778264332344
dvarsstd0.8269911860653412
dvarsvstd0.8439936327556818
efc0.5311
fber25523.6426
fdmean0.28077848034384106
fdnum311
fdperc44.11347517730496
fwhmavg3.3976079429777832
fwhmx3.066289951219512
fwhmy3.4212526829268293
fwhmz3.7052811947870077
gcor0.0164056
gsrx-0.003844487713649869
gsry0.04701085761189461
sizet705
sizex64
sizey64
sizez40
snr2.8471253428438126
spacingtr1.0
spacingx3.203125
spacingy3.203125
spacingz3.200000047683716
summarybgk14.763
summarybgmad2.0525
summarybgmean23.6743
summarybgmedian2.0
summarybgn117268.0
summarybgp051.0
summarybgp95127.0
summarybgstdv47.3396
summaryfgk0.0037
summaryfgmad134.9399
summaryfgmean398.2093
summaryfgmedian390.0
summaryfgn46572.0
summaryfgp05184.0
summaryfgp95636.0
summaryfgstdv136.9788
tsnr22.11320789367892
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