Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-23/figures/sub-23_task-citizenfour_run-04_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-23/figures/sub-23_task-citizenfour_run-04_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-23/figures/sub-23_task-citizenfour_run-04_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-23/figures/sub-23_task-citizenfour_run-04_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-23/figures/sub-23_task-citizenfour_run-04_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-23/figures/sub-23_task-citizenfour_run-04_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-23/figures/sub-23_task-citizenfour_run-04_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-23/figures/sub-23_task-citizenfour_run-04_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-23/func/sub-23_task-citizenfour_run-04_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumffc573a70f325f845a7e0c5df3336ba8

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime19:24:25.907500
BandwidthPerPixelPhaseEncode19.531
BaseResolution64
CogAtlasIDhttp://www.cognitiveatlas.org/task/id/tsk_jbg1oF4D9OTkO/
CoilStringC:HEA;HEP
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190902
DerivedVendorReportedEchoSpacing0.00080001
DeviceSerialNumber26099
DwellTime5.3e-06
EchoTime0.0548
EffectiveEchoSpacing0.00080001
FlipAngle75
ImageCommentsUnaliased_MB4_PE3_LB_SENSE1
ImageOrientationPatientDICOM[1, 2e-16, 0, -2e-16, 0.969016, -0.246999]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'MOSAIC']
ImagingFrequency63.6806
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressBedford_Way_26_London_London_GB_WC1H_0AP
InstitutionNameBUCNI
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength1.5
ManufacturerSiemens
ManufacturersModelNameAvanto
ModalityMR
MultibandAccelerationFactor4
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1474
ProcedureStepDescriptionucl_bbk_Jeremy
ProtocolNameEcL4-3.2m-40-1474-1s-55e
PulseSequenceDetails%CustomerSeq%_cmrr_mbep2d_bold
ReceiveCoilName32Ch_Head
ReconMatrixPE64
RepetitionTime1
SAR0.0457533
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_64
SequenceVariantSK_SS
SeriesDescriptionEcL4-3.2m-40-1474-1s-55e
SeriesNumber10
ShimSetting[104, 19, 231, 468, -116, 775, -351, 269]
SliceThickness3.2
SliceTiming[0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025, 0, 0.7025, 0.4025, 0.1, 0.8025, 0.5025, 0.2, 0.9025, 0.6025, 0.3025]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices3.2
StationNameMRC26099
TaskNamecitizenfour
TotalReadoutTime0.0504006
TxRefAmp224.404
dcmmetaaffine[[-3.203125, -6.40624994052057e-16, 1.5807936343101612e-16, 102.5], [-6.40624994052057e-16, 3.1038784980773926, -0.7903968095779419, -76.5459976196289], [0.0, 0.7911686897277832, 3.1008503437042236, -65.96133422851562], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 40, 742]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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aor0.0007358086253369271
aqi0.010245593382749326
dummy_trs0
dvarsnstd23.51039055327936
dvarsstd0.962154009703104
dvarsvstd0.9557693481781375
efc0.5131
fber15927.207
fdmean0.09679206238471176
fdnum54
fdperc7.277628032345014
fwhmavg3.6696650725679665
fwhmx3.5902751219512195
fwhmy3.6145639024390244
fwhmz3.804156193313655
gcor0.0449395
gsrx0.012804870493710041
gsry0.025542743504047394
sizet742
sizex64
sizey64
sizez40
snr2.4113392273966348
spacingtr1.0
spacingx3.203125
spacingy3.203125
spacingz3.200000047683716
summarybgk52.4716
summarybgmad3.0971
summarybgmean27.3586
summarybgmedian3.0
summarybgn118619.0
summarybgp051.0
summarybgp95135.0
summarybgstdv71.3483
summaryfgk-0.067
summaryfgmad162.8445
summaryfgmean413.959
summaryfgmedian404.0
summaryfgn45221.0
summaryfgp05141.0
summaryfgp95709.0
summaryfgstdv167.5399
tsnr41.987059825332835
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