Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS238/figures/sub-CTS238_task-restfixationnofeedback_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS238/figures/sub-CTS238_task-restfixationnofeedback_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS238/figures/sub-CTS238_task-restfixationnofeedback_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS238/figures/sub-CTS238_task-restfixationnofeedback_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS238/figures/sub-CTS238_task-restfixationnofeedback_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS238/figures/sub-CTS238_task-restfixationnofeedback_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS238/figures/sub-CTS238_task-restfixationnofeedback_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS238/figures/sub-CTS238_task-restfixationnofeedback_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS238/func/sub-CTS238_task-restfixationnofeedback_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sume20af06b6d35d119fbccbc9e985bff44

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime09:33:13.957500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.997654, -0.0509465, -0.0457332, 0.0608272, 0.966174, 0.250613]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_Dosenbach_MSC
ProtocolNameep2d_bold_rest2
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.150046
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest2
SeriesNumber7
ShimSetting[-261, -19693, 7988, 384, 112, -946, 773, 45]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.4125, 0.1575, 1.49, 0.235, 1.5675, 0.3125, 1.6475, 0.3925, 1.725, 0.47, 1.8025, 0.55, 1.8825, 0.6275, 1.96, 0.705, 2.04, 0.785, 2.1175, 0.8625, 2.195, 0.94, 2.275, 1.02, 2.3525, 1.0975, 2.43, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationnofeedback
TotalReadoutTime0.0371701
TxRefAmp341.242
dcmmetaaffine[[-3.990614891052246, 0.2433089166879654, -0.12567339837551117, 108.6343002319336], [0.20378591120243073, 3.8646979331970215, 1.0112266540527344, -151.06729125976562], [-0.18293264508247375, -1.0024518966674805, 3.8680241107940674, 15.90594482421875], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.007471341463414634
aqi0.015207790060975609
dummy_trs0
dvarsnstd21.680206158036814
dvarsstd1.25021455202454
dvarsvstd1.0029832319018401
efc0.4019
fber51127.1562
fdmean0.21267188024816644
fdnum56
fdperc34.146341463414636
fwhmavg2.232480327259061
fwhmx2.1434825
fwhmy2.4950225
fwhmz2.0589359817771826
gcor0.0320561
gsrx-0.025620974600315094
gsry0.01816675439476967
sizet164
sizex64
sizey64
sizez32
snr4.234253227711323
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.999998092651367
summarybgk45.273
summarybgmad3.2816
summarybgmean23.0811
summarybgmedian4.0
summarybgn108965.0
summarybgp051.0
summarybgp95113.0
summarybgstdv63.5471
summaryfgk2.6562
summaryfgmad119.3134
summaryfgmean790.8437
summaryfgmedian829.0
summaryfgn22107.0
summaryfgp05336.0
summaryfgp951022.0
summaryfgstdv195.7798
tsnr60.515680408570915
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