Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS237/figures/sub-CTS237_task-restfixationnofeedback_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS237/figures/sub-CTS237_task-restfixationnofeedback_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS237/figures/sub-CTS237_task-restfixationnofeedback_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS237/figures/sub-CTS237_task-restfixationnofeedback_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS237/figures/sub-CTS237_task-restfixationnofeedback_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS237/figures/sub-CTS237_task-restfixationnofeedback_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS237/figures/sub-CTS237_task-restfixationnofeedback_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS237/figures/sub-CTS237_task-restfixationnofeedback_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS237/func/sub-CTS237_task-restfixationnofeedback_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum312e8fdffe742fa1f699181883a46f58

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime08:01:34.992500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.997236, -0.0648561, 0.0362523, 0.0602086, 0.991282, 0.117194]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest2
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.162777
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest2
SeriesNumber8
ShimSetting[-208, -18758, 7392, -133, -18, 1559, 790, -65]
SliceThickness4
SliceTiming[1.255, 0, 1.335, 0.08, 1.4125, 0.1575, 1.49, 0.235, 1.57, 0.315, 1.6475, 0.3925, 1.725, 0.4725, 1.805, 0.55, 1.8825, 0.6275, 1.9625, 0.7075, 2.04, 0.785, 2.1175, 0.8625, 2.1975, 0.9425, 2.275, 1.02, 2.3525, 1.1, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationnofeedback
TotalReadoutTime0.0371701
TxRefAmp345.106
dcmmetaaffine[[-3.988943576812744, 0.2408342808485031, 0.17414778470993042, 119.68867492675781], [0.2594242990016937, 3.9651291370391846, 0.4587474465370178, -146.45001220703125], [0.14500916004180908, -0.46877413988113403, 3.969787120819092, -17.988414764404297], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0020467073170731703
aqi0.0030365509756097564
dummy_trs0
dvarsnstd23.97275585312883
dvarsstd1.4919770754601227
dvarsvstd1.0067412544785277
efc0.3953
fber48154.9844
fdmean0.1067646654383217
fdnum10
fdperc6.097560975609756
fwhmavg2.2999136256635913
fwhmx2.1759675
fwhmy2.62185
fwhmz2.101923376990774
gcor0.0177003
gsrx-0.026514902710914612
gsry0.020520759746432304
sizet164
sizex64
sizey64
sizez32
snr3.871106660502788
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.9999983310699463
summarybgk32.6837
summarybgmad3.824
summarybgmean29.8606
summarybgmedian5.0
summarybgn110448.0
summarybgp052.0
summarybgp95160.0
summarybgstdv72.7231
summaryfgk1.304
summaryfgmad175.069
summaryfgmean933.9619
summaryfgmedian1000.0
summaryfgn20624.0
summaryfgp05355.0
summaryfgp951240.0
summaryfgstdv258.3178
tsnr114.84345953632146
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