Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS237/figures/sub-CTS237_task-restbaseline_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS237/figures/sub-CTS237_task-restbaseline_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS237/figures/sub-CTS237_task-restbaseline_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS237/figures/sub-CTS237_task-restbaseline_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS237/figures/sub-CTS237_task-restbaseline_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS237/figures/sub-CTS237_task-restbaseline_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS237/figures/sub-CTS237_task-restbaseline_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS237/figures/sub-CTS237_task-restbaseline_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS237/func/sub-CTS237_task-restbaseline_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum11cbcbc2d8d44f971550d25dae49095b

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime07:45:58.680000
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.997236, -0.0648561, 0.0362523, 0.0602086, 0.991282, 0.117194]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.162777
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber6
ShimSetting[-208, -18758, 7392, -133, -18, 1559, 790, -65]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.41, 0.1575, 1.49, 0.235, 1.5675, 0.3125, 1.6475, 0.3925, 1.725, 0.47, 1.8025, 0.5475, 1.8825, 0.6275, 1.96, 0.705, 2.0375, 0.785, 2.1175, 0.8625, 2.195, 0.94, 2.275, 1.02, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestbaseline
TotalReadoutTime0.0371701
TxRefAmp345.106
dcmmetaaffine[[-3.988943576812744, 0.2408342808485031, 0.17414778470993042, 119.68867492675781], [0.2594242990016937, 3.9651291370391846, 0.4587474465370178, -146.45001220703125], [0.14500916004180908, -0.46877413988113403, 3.969787120819092, -17.988414764404297], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0026448780487804873
aqi0.002330746707317073
dummy_trs0
dvarsnstd21.482696977730054
dvarsstd1.5160919962576684
dvarsvstd1.0268522591411036
efc0.3959
fber48523.125
fdmean0.09747254266677988
fdnum7
fdperc4.2682926829268295
fwhmavg2.289622791988475
fwhmx2.1809525
fwhmy2.58845
fwhmz2.099465875965424
gcor0.0211314
gsrx-0.02680339105427265
gsry0.022618239745497704
sizet164
sizex64
sizey64
sizez32
snr3.9358680103101844
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.9999983310699463
summarybgk26.1834
summarybgmad3.8331
summarybgmean29.8981
summarybgmedian5.0
summarybgn110444.0
summarybgp052.0
summarybgp95161.0
summarybgstdv72.4938
summaryfgk1.3064
summaryfgmad174.9922
summaryfgmean934.0756
summaryfgmedian997.0
summaryfgn20628.0
summaryfgp05375.0
summaryfgp951238.0
summaryfgstdv253.3052
tsnr123.99807073362172
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