Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS235/figures/sub-CTS235_task-restfixationnofeedback_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS235/figures/sub-CTS235_task-restfixationnofeedback_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS235/figures/sub-CTS235_task-restfixationnofeedback_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS235/figures/sub-CTS235_task-restfixationnofeedback_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS235/figures/sub-CTS235_task-restfixationnofeedback_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS235/figures/sub-CTS235_task-restfixationnofeedback_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS235/figures/sub-CTS235_task-restfixationnofeedback_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS235/figures/sub-CTS235_task-restfixationnofeedback_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS235/func/sub-CTS235_task-restfixationnofeedback_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sume5bedb56614987815cbf978bf8b9300c

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime16:11:35.500000
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.991706, -0.00747498, 0.128307, 0.00342175, 0.999489, 0.0317816]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest2
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.15654
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest2
SeriesNumber14
ShimSetting[-190, -19653, 7997, 163, -45, -693, 25, -28]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.4125, 0.1575, 1.49, 0.235, 1.5675, 0.315, 1.6475, 0.3925, 1.725, 0.47, 1.805, 0.55, 1.8825, 0.6275, 1.96, 0.705, 2.04, 0.785, 2.1175, 0.8625, 2.195, 0.94, 2.275, 1.02, 2.3525, 1.0975, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationnofeedback
TotalReadoutTime0.0371701
TxRefAmp355.816
dcmmetaaffine[[-3.966825485229492, 0.01368700247257948, 0.5139144659042358, 116.89867401123047], [0.029899917542934418, 3.9979560375213623, 0.12431589514017105, -133.6460418701172], [0.5132263898849487, -0.12712635099887848, 3.9649012088775635, -25.37476921081543], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0609330487804878
aqi0.10587083353658538
dummy_trs0
dvarsnstd40.65609564503069
dvarsstd1.0219655371165646
dvarsvstd1.1525774050306752
efc0.3863
fber52498.4766
fdmean0.874194901102193
fdnum67
fdperc40.853658536585364
fwhmavg2.180649915037861
fwhmx2.19763
fwhmy2.2061775
fwhmz2.1381422451135816
gcor0.0730539
gsrx-0.02266949787735939
gsry-3.1815307011129335e-05
sizet164
sizex64
sizey64
sizez32
snr4.967097386129765
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.000000476837158
summarybgk42.3839
summarybgmad2.1697
summarybgmean21.5754
summarybgmedian3.0
summarybgn111246.0
summarybgp051.0
summarybgp95112.0
summarybgstdv60.6181
summaryfgk2.8844
summaryfgmad105.7529
summaryfgmean757.9385
summaryfgmedian785.0
summaryfgn19826.0
summaryfgp05402.0
summaryfgp95950.0
summaryfgstdv158.036
tsnr19.1349486647523
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