Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationfixed_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationfixed_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationfixed_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationfixed_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationfixed_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationfixed_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS231/figures/sub-CTS231_task-restfixationfixed_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationfixed_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS231/func/sub-CTS231_task-restfixationfixed_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum565729afadaabfc03b0554f206144954

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime18:55:26.472500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.998555, -0.0371559, -0.0388336, 0.0392539, 0.997729, 0.0547359]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_nonad_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.113534
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_nonad_rest
SeriesNumber14
ShimSetting[-267, -19498, 7988, 32, 38, -243, 135, 19]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.4125, 0.1575, 1.49, 0.235, 1.5675, 0.315, 1.6475, 0.3925, 1.725, 0.47, 1.805, 0.55, 1.8825, 0.6275, 1.96, 0.705, 2.04, 0.785, 2.1175, 0.8625, 2.195, 0.9425, 2.275, 1.02, 2.3525, 1.0975, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationfixed
TotalReadoutTime0.0371701
TxRefAmp340.486
dcmmetaaffine[[-3.994218587875366, 0.15701542794704437, -0.14684653282165527, 120.25151824951172], [0.14862364530563354, 3.9909160137176514, 0.22472479939460754, -140.8764190673828], [-0.15533436834812164, -0.218943789601326, 3.990981340408325, -32.8968391418457], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0013264024390243904
aqi0.003925471219512195
dummy_trs0
dvarsnstd13.987121898220854
dvarsstd1.1920449847239258
dvarsvstd0.9507246322699385
efc0.3942
fber65070.8438
fdmean0.08007697628932173
fdnum12
fdperc7.317073170731708
fwhmavg2.2899342085339653
fwhmx2.2525025
fwhmy2.51005
fwhmz2.107250125601895
gcor0.0224725
gsrx-0.023325789719820023
gsry0.011276338249444962
sizet164
sizex64
sizey64
sizez32
snr4.163939156892314
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.999999761581421
summarybgk42.041
summarybgmad2.4047
summarybgmean20.0533
summarybgmedian3.0
summarybgn109426.0
summarybgp051.0
summarybgp9598.0
summarybgstdv59.1252
summaryfgk2.5647
summaryfgmad126.5184
summaryfgmean722.3002
summaryfgmedian753.0
summaryfgn21646.0
summaryfgp05308.0
summaryfgp95941.0
summaryfgstdv180.8342
tsnr109.16859195614234
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