Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationadaptive_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationadaptive_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationadaptive_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationadaptive_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationadaptive_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationadaptive_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS231/figures/sub-CTS231_task-restfixationadaptive_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS231/figures/sub-CTS231_task-restfixationadaptive_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS231/func/sub-CTS231_task-restfixationadaptive_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sume4bd1434d4382ae69751d89c73b03559

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime18:46:35.575000
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.998555, -0.0371559, -0.0388336, 0.0392539, 0.997729, 0.0547359]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_ad_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.113534
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_ad_rest
SeriesNumber13
ShimSetting[-267, -19498, 7988, 32, 38, -243, 135, 19]
SliceThickness4
SliceTiming[1.255, 0, 1.335, 0.08, 1.4125, 0.1575, 1.49, 0.235, 1.57, 0.315, 1.6475, 0.3925, 1.725, 0.47, 1.805, 0.55, 1.8825, 0.6275, 1.9625, 0.7075, 2.04, 0.785, 2.1175, 0.8625, 2.1975, 0.9425, 2.275, 1.02, 2.3525, 1.0975, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationadaptive
TotalReadoutTime0.0371701
TxRefAmp340.486
dcmmetaaffine[[-3.994218587875366, 0.15701542794704437, -0.14684653282165527, 120.25151824951172], [0.14862364530563354, 3.9909160137176514, 0.22472479939460754, -140.8764190673828], [-0.15533436834812164, -0.218943789601326, 3.990981340408325, -32.8968391418457], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.00401329268292683
aqi0.0036377410365853653
dummy_trs0
dvarsnstd14.199248026993871
dvarsstd1.3112711355828213
dvarsvstd1.009253953619632
efc0.3939
fber64916.2188
fdmean0.060242912213420444
fdnum6
fdperc3.658536585365854
fwhmavg2.2829808748346094
fwhmx2.252615
fwhmy2.5075
fwhmz2.0888276245038284
gcor0.0194281
gsrx-0.023299293592572212
gsry0.011433782987296581
sizet164
sizex64
sizey64
sizez32
snr4.198607600713656
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.999999761581421
summarybgk42.6928
summarybgmad2.3957
summarybgmean20.1137
summarybgmedian3.0
summarybgn109494.0
summarybgp051.0
summarybgp9598.0
summarybgstdv59.4649
summaryfgk2.6421
summaryfgmad126.3693
summaryfgmean723.4593
summaryfgmedian753.5
summaryfgn21578.0
summaryfgp05316.0
summaryfgp95940.0
summaryfgstdv179.4601
tsnr106.36608529090881
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