Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS231/figures/sub-CTS231_task-restbaseline_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restbaseline_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restbaseline_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restbaseline_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS231/figures/sub-CTS231_task-restbaseline_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS231/figures/sub-CTS231_task-restbaseline_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS231/figures/sub-CTS231_task-restbaseline_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS231/figures/sub-CTS231_task-restbaseline_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS231/func/sub-CTS231_task-restbaseline_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumc05afc03be83e3b3383056808410e0a0

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime17:53:49.185000
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.998555, -0.0371559, -0.0388336, 0.0392539, 0.997729, 0.0547359]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.113534
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber6
ShimSetting[-267, -19498, 7988, 32, 38, -243, 135, 19]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.41, 0.155, 1.49, 0.235, 1.5675, 0.3125, 1.645, 0.39, 1.725, 0.47, 1.8025, 0.5475, 1.88, 0.6275, 1.96, 0.705, 2.0375, 0.7825, 2.1175, 0.8625, 2.195, 0.94, 2.2725, 1.0175, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestbaseline
TotalReadoutTime0.0371701
TxRefAmp340.486
dcmmetaaffine[[-3.994218587875366, 0.15701542794704437, -0.14684653282165527, 120.25151824951172], [0.14862364530563354, 3.9909160137176514, 0.22472479939460754, -140.8764190673828], [-0.15533436834812164, -0.218943789601326, 3.990981340408325, -32.8968391418457], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.002913803680981595
aqi0.0046106466871165645
dummy_trs1
dvarsnstd15.024469663888892
dvarsstd1.333591202716049
dvarsvstd0.9886256644444442
efc0.391
fber68566.3047
fdmean0.06384634487147865
fdnum3
fdperc1.8404907975460123
fwhmavg2.265816708239816
fwhmx2.20053
fwhmy2.504475
fwhmz2.0924451247194487
gcor0.0140612
gsrx-0.024485407397150993
gsry0.011340194381773472
sizet163
sizex64
sizey64
sizez32
snr4.290221139231512
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.999999761581421
summarybgk43.5571
summarybgmad2.3467
summarybgmean20.4501
summarybgmedian3.0
summarybgn109883.0
summarybgp051.0
summarybgp9595.0
summarybgstdv62.564
summaryfgk2.6762
summaryfgmad128.2314
summaryfgmean731.6838
summaryfgmedian758.0
summaryfgn21189.0
summaryfgp05336.0
summaryfgp95949.0
summaryfgstdv176.6767
tsnr96.80149397067726
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