Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationfixed_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationfixed_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationfixed_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationfixed_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationfixed_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationfixed_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS230/figures/sub-CTS230_task-restfixationfixed_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationfixed_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS230/func/sub-CTS230_task-restfixationfixed_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumcf2a24bc79cf2b41cab409ed02662ed8

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime08:27:59.142500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.998266, -0.0582745, 0.00832889, 0.0545896, 0.969368, 0.239469]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_nonad_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.146205
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_nonad_rest
SeriesNumber10
ShimSetting[-205, -19647, 8001, 289, 69, -217, 540, 94]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.41, 0.155, 1.49, 0.235, 1.5675, 0.3125, 1.645, 0.3925, 1.725, 0.47, 1.8025, 0.5475, 1.8825, 0.6275, 1.96, 0.705, 2.0375, 0.7825, 2.1175, 0.8625, 2.195, 0.94, 2.2725, 1.02, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationfixed
TotalReadoutTime0.0371701
TxRefAmp345.131
dcmmetaaffine[[-3.993063449859619, 0.21835851669311523, 0.0881146714091301, 126.60234832763672], [0.2330980896949768, 3.8774728775024414, 0.9543942809104919, -147.8131866455078], [0.03331556171178818, -0.9578748345375061, 3.8834705352783203, 12.151058197021484], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0037667073170731713
aqi0.021405716341463415
dummy_trs0
dvarsnstd17.41123088325154
dvarsstd1.0963400457668706
dvarsvstd0.8831752468711659
efc0.4003
fber59427.3359
fdmean0.15685574662533175
fdnum43
fdperc26.21951219512195
fwhmavg2.3016722148808118
fwhmx2.195565
fwhmy2.58695
fwhmz2.122501644642435
gcor0.0064303
gsrx-0.02563687041401863
gsry0.019862323999404907
sizet164
sizex64
sizey64
sizez32
snr4.359577925267066
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.9999969005584717
summarybgk42.9044
summarybgmad2.3053
summarybgmean20.1432
summarybgmedian3.0
summarybgn108888.0
summarybgp051.0
summarybgp95103.0
summarybgstdv57.2705
summaryfgk2.9001
summaryfgmad114.7616
summaryfgmean720.9102
summaryfgmedian751.0
summaryfgn22184.0
summaryfgp05337.0
summaryfgp95927.0
summaryfgstdv172.2605
tsnr49.40743737493176
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