Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationadaptive_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationadaptive_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationadaptive_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationadaptive_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationadaptive_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationadaptive_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS230/figures/sub-CTS230_task-restfixationadaptive_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS230/figures/sub-CTS230_task-restfixationadaptive_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS230/func/sub-CTS230_task-restfixationadaptive_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum1cddb480e06f1fc38115880e0ef09062

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime08:36:51.747500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.998266, -0.0582745, 0.00832889, 0.0545896, 0.969368, 0.239469]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_ad_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.146205
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_ad_rest
SeriesNumber11
ShimSetting[-205, -19647, 8001, 289, 69, -217, 540, 94]
SliceThickness4
SliceTiming[1.255, 0, 1.335, 0.08, 1.4125, 0.1575, 1.49, 0.235, 1.57, 0.315, 1.6475, 0.3925, 1.7275, 0.4725, 1.805, 0.55, 1.8825, 0.6275, 1.9625, 0.7075, 2.04, 0.785, 2.1175, 0.8625, 2.1975, 0.9425, 2.275, 1.02, 2.3525, 1.1, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationadaptive
TotalReadoutTime0.0371701
TxRefAmp345.131
dcmmetaaffine[[-3.993063449859619, 0.21835851669311523, 0.0881146714091301, 126.60234832763672], [0.2330980896949768, 3.8774728775024414, 0.9543942809104919, -147.8131866455078], [0.03331556171178818, -0.9578748345375061, 3.8834705352783203, 12.151058197021484], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.00867621951219512
aqi0.023166127499999998
dummy_trs0
dvarsnstd17.183962634662574
dvarsstd1.0112445316564416
dvarsvstd0.9036485012269942
efc0.3991
fber60351.4609
fdmean0.17337422978710793
fdnum37
fdperc22.5609756097561
fwhmavg2.1809263499563962
fwhmx2.07252
fwhmy2.4700675
fwhmz2.0001915498691885
gcor0.0126327
gsrx-0.028458744287490845
gsry0.016387496143579483
sizet164
sizex64
sizey64
sizez32
snr4.728693660770008
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.9999969005584717
summarybgk51.9357
summarybgmad2.3143
summarybgmean22.1263
summarybgmedian3.0
summarybgn109591.0
summarybgp051.0
summarybgp95111.0
summarybgstdv66.6881
summaryfgk3.175
summaryfgmad110.9329
summaryfgmean733.5659
summaryfgmedian756.0
summaryfgn21481.0
summaryfgp05387.0
summaryfgp95932.0
summaryfgstdv159.8713
tsnr51.56776856817305
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