Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS226/figures/sub-CTS226_task-restbaseline_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS226/figures/sub-CTS226_task-restbaseline_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS226/figures/sub-CTS226_task-restbaseline_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS226/figures/sub-CTS226_task-restbaseline_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS226/figures/sub-CTS226_task-restbaseline_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS226/figures/sub-CTS226_task-restbaseline_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS226/figures/sub-CTS226_task-restbaseline_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS226/figures/sub-CTS226_task-restbaseline_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS226/func/sub-CTS226_task-restbaseline_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum1b005c0c8b9373279c32ce97151902f1

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime16:44:40.092500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.991018, 0.118541, -0.0619059, -0.100795, 0.966319, 0.236785]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.141927
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber5
ShimSetting[-302, -19650, 8017, 441, 12, -20, 590, -1]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.41, 0.1575, 1.49, 0.235, 1.5675, 0.3125, 1.6475, 0.3925, 1.725, 0.47, 1.8025, 0.5475, 1.8825, 0.6275, 1.96, 0.705, 2.0375, 0.785, 2.1175, 0.8625, 2.195, 0.94, 2.275, 1.02, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestbaseline
TotalReadoutTime0.0371701
TxRefAmp351.345
dcmmetaaffine[[-3.9640703201293945, -0.4031798839569092, -0.3515581786632538, 143.54417419433594], [-0.4741620421409607, 3.8652772903442383, 0.9136748909950256, -131.7812042236328], [-0.2476235330104828, -0.9471413493156433, 3.878352403640747, 4.2241973876953125], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'AcquisitionTime': ['164440.092500', '164442.602500', '164445.112500', '164447.622500', '164450.132500', '164452.642500', '164455.152500', '164457.662500', '164500.172500', '164502.682500', '164505.192500', '164507.702500', '164510.212500', '164512.722500', '164515.232500', '164517.742500', '164520.252500', '164522.762500', '164525.272500', '164527.782500', '164530.292500', '164532.802500', '164535.312500', '164537.822500', '164540.332500', '164542.842500', '164545.352500', '164547.862500', '164550.372500', '164552.882500', '164555.392500', '164557.902500', '164600.412500', '164602.922500', '164605.432500', '164607.942500', '164610.452500', '164612.962500', '164615.472500', '164617.982500', '164620.492500', '164623.002500', '164625.512500', '164628.022500', '164630.532500', '164633.042500', '164635.552500', '164638.062500', '164640.572500', '164643.085000', '164645.595000', '164648.105000', '164650.615000', '164653.125000', '164655.635000', '164658.145000', '164700.655000', '164703.165000', '164705.675000', '164708.185000', '164710.695000', '164713.205000', '164715.715000', '164718.225000', '164720.735000', '164723.245000', '164725.755000', '164728.265000', '164730.775000', '164733.285000', '164735.795000', '164738.305000', '164740.815000', '164743.325000', '164745.835000', '164748.345000', '164750.855000', '164753.365000', '164755.875000', '164758.385000', '164800.895000', '164803.405000', '164805.915000', '164808.425000', '164810.935000', '164813.445000', '164815.955000', '164818.465000', '164820.975000', '164823.485000', '164825.995000', '164828.505000', '164831.015000', '164833.525000', '164836.035000', '164838.545000', '164841.055000', '164843.565000', '164846.075000', '164848.585000', '164851.095000', '164853.605000', '164856.115000', '164858.625000', '164901.135000', '164903.645000', '164906.155000', '164908.665000', '164911.175000', '164913.685000', '164916.195000', '164918.707500', '164921.217500', '164923.727500', '164926.237500', '164928.747500', '164931.257500', '164933.767500', '164936.277500', '164938.787500', '164941.297500', '164943.807500', '164946.317500', '164948.827500', '164951.337500', '164953.847500', '164956.357500', '164958.867500', '165001.377500', '165003.887500', '165006.397500', '165008.907500', '165011.417500', '165013.927500', '165016.437500', '165018.947500', '165021.457500', '165023.967500', '165026.477500', '165028.987500', '165031.497500', '165034.007500', '165036.517500', '165039.027500', '165041.537500', '165044.047500', '165046.557500', '165049.067500', '165051.577500', '165054.087500', '165056.597500', '165059.107500', '165101.617500', '165104.127500', '165106.637500', '165109.147500', '165111.657500', '165114.167500', '165116.677500', '165119.187500', '165121.697500', '165124.207500', '165126.717500', '165129.227500'], 'ContentTime': ['164441.625000', '164444.109000', '164446.609000', '164449.109000', '164451.609000', '164454.109000', '164456.609000', '164459.109000', '164501.609000', '164504.109000', '164506.609000', '164509.109000', '164511.609000', '164514.109000', '164516.609000', '164519.109000', '164521.609000', '164524.109000', '164526.609000', '164529.109000', '164531.609000', '164534.109000', '164536.609000', '164539.109000', '164541.609000', '164544.109000', '164546.609000', '164549.109000', '164551.609000', '164554.109000', '164556.609000', '164559.109000', '164601.609000', '164604.109000', '164606.609000', '164609.109000', '164611.609000', '164614.109000', '164616.609000', '164619.109000', '164621.609000', '164624.109000', '164626.609000', '164629.109000', '164631.609000', '164634.109000', '164636.609000', '164639.109000', '164641.609000', '164644.109000', '164646.609000', '164649.109000', '164651.609000', '164654.109000', '164656.609000', '164659.109000', '164701.609000', '164704.109000', '164706.609000', '164709.109000', '164711.609000', '164714.109000', '164716.609000', '164719.109000', '164721.609000', '164724.109000', '164726.609000', '164729.109000', '164731.609000', '164734.109000', '164736.609000', '164739.109000', '164741.609000', '164744.109000', '164746.609000', '164749.109000', '164751.609000', '164754.109000', '164756.609000', '164759.109000', '164801.609000', '164804.109000', '164806.609000', '164809.109000', '164811.609000', '164814.109000', '164816.609000', '164819.109000', '164821.609000', '164824.109000', '164826.609000', '164829.109000', '164831.609000', '164834.109000', '164836.609000', '164839.109000', '164841.609000', '164844.109000', '164846.609000', '164849.109000', '164851.609000', '164854.109000', '164856.609000', '164859.109000', '164901.609000', '164904.109000', '164906.609000', '164909.109000', '164911.609000', '164914.109000', '164916.609000', '164919.109000', '164921.609000', '164924.109000', '164926.609000', '164929.109000', '164931.609000', '164934.109000', '164936.609000', '164939.109000', '164941.609000', '164944.109000', '164946.609000', '164949.109000', '164951.609000', '164954.109000', '164956.609000', '164959.109000', '165001.609000', '165004.109000', '165006.609000', '165009.109000', '165011.609000', '165014.109000', '165016.609000', '165019.109000', '165021.609000', '165024.109000', '165026.609000', '165029.109000', '165031.609000', '165034.109000', '165036.609000', '165039.109000', '165041.609000', '165044.109000', '165046.609000', '165049.109000', '165051.609000', '165054.109000', '165056.609000', '165059.109000', '165101.609000', '165104.109000', '165106.609000', '165109.109000', '165111.609000', '165114.109000', '165116.609000', '165119.109000', '165121.609000', '165124.109000', '165126.609000', '165128.968000'], 'InstanceCreationTime': ['164441.625000', '164444.109000', '164446.609000', '164449.109000', '164451.609000', '164454.109000', '164456.609000', '164459.109000', '164501.609000', '164504.109000', '164506.609000', '164509.109000', '164511.609000', '164514.109000', '164516.609000', '164519.109000', '164521.609000', '164524.109000', '164526.609000', '164529.109000', '164531.609000', '164534.109000', '164536.609000', '164539.109000', '164541.609000', '164544.109000', '164546.609000', '164549.109000', '164551.609000', '164554.109000', '164556.609000', '164559.109000', '164601.609000', '164604.109000', '164606.609000', '164609.109000', '164611.609000', '164614.109000', '164616.609000', '164619.109000', '164621.609000', '164624.109000', '164626.609000', '164629.109000', '164631.609000', '164634.109000', '164636.609000', '164639.109000', '164641.609000', '164644.109000', '164646.609000', '164649.109000', '164651.609000', '164654.109000', '164656.609000', '164659.109000', '164701.609000', '164704.109000', '164706.609000', '164709.109000', '164711.609000', '164714.109000', '164716.609000', '164719.109000', '164721.609000', '164724.109000', '164726.609000', '164729.109000', '164731.609000', '164734.109000', '164736.609000', '164739.109000', '164741.609000', '164744.109000', '164746.609000', '164749.109000', '164751.609000', '164754.109000', '164756.609000', '164759.109000', '164801.609000', '164804.109000', '164806.609000', '164809.109000', '164811.609000', '164814.109000', '164816.609000', '164819.109000', '164821.609000', '164824.109000', '164826.609000', '164829.109000', '164831.609000', '164834.109000', '164836.609000', '164839.109000', '164841.609000', '164844.109000', '164846.609000', '164849.109000', '164851.609000', '164854.109000', '164856.609000', '164859.109000', '164901.609000', '164904.109000', '164906.609000', '164909.109000', '164911.609000', '164914.109000', '164916.609000', '164919.109000', '164921.609000', '164924.109000', '164926.609000', '164929.109000', '164931.609000', '164934.109000', '164936.609000', '164939.109000', '164941.609000', '164944.109000', '164946.609000', '164949.109000', '164951.609000', '164954.109000', '164956.609000', '164959.109000', '165001.609000', '165004.109000', '165006.609000', '165009.109000', '165011.609000', '165014.109000', '165016.609000', '165019.109000', '165021.609000', '165024.109000', '165026.609000', '165029.109000', '165031.609000', '165034.109000', '165036.609000', '165039.109000', '165041.609000', '165044.109000', '165046.609000', '165049.109000', '165051.609000', '165054.109000', '165056.609000', '165059.109000', '165101.609000', '165104.109000', '165106.609000', '165109.109000', '165111.609000', '165114.109000', '165116.609000', '165119.109000', '165121.609000', '165124.109000', '165126.609000', '165128.968000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'LargestImagePixelValue': [1531, 1469, 1475, 1378, 1449, 1379, 1404, 1378, 1488, 1434, 1443, 1444, 1370, 1333, 1462, 1436, 1368, 1396, 1411, 1496, 1471, 1443, 1541, 1398, 1556, 1340, 1392, 1606, 1355, 1943, 1473, 1385, 1398, 1448, 1547, 1558, 1523, 1508, 1436, 1417, 1494, 1528, 1436, 1396, 1435, 1375, 1487, 1534, 1718, 1654, 1774, 1737, 1821, 1483, 1511, 1487, 1562, 1881, 1498, 1447, 1575, 1435, 1449, 1711, 1460, 1389, 1517, 1487, 1457, 1443, 1389, 1516, 1422, 1435, 1482, 1429, 1416, 1427, 1800, 1594, 1591, 1441, 1819, 1577, 1530, 1553, 1542, 1471, 1440, 1517, 1523, 1523, 1599, 1569, 1595, 1382, 1575, 1607, 1590, 1495, 1788, 1574, 1393, 1460, 1724, 1462, 1363, 1523, 1739, 1592, 1366, 1618, 1537, 2155, 1510, 1602, 1535, 1604, 1718, 1693, 1770, 1837, 1907, 1734, 1526, 1470, 1443, 1541, 1463, 1538, 1482, 1545, 1480, 1434, 1585, 1497, 1515, 1538, 1761, 1725, 1560, 1468, 1612, 1517, 1872, 1513, 1599, 1711, 1527, 1505, 1423, 1478, 1500, 1508, 1504, 1380, 1607, 1500, 1446, 1497, 1530, 1503, 1469, 1628], 'WindowCenter': [638.0, 637.0, 637.0, 621.0, 640.0, 636.0, 635.0, 627.0, 642.0, 638.0, 637.0, 637.0, 637.0, 620.0, 642.0, 637.0, 635.0, 635.0, 636.0, 636.0, 636.0, 638.0, 629.0, 627.0, 636.0, 639.0, 618.0, 631.0, 619.0, 647.0, 640.0, 638.0, 634.0, 611.0, 641.0, 633.0, 637.0, 638.0, 638.0, 639.0, 624.0, 635.0, 642.0, 633.0, 638.0, 636.0, 632.0, 617.0, 632.0, 624.0, 626.0, 637.0, 636.0, 639.0, 642.0, 635.0, 614.0, 632.0, 617.0, 611.0, 643.0, 640.0, 622.0, 637.0, 642.0, 643.0, 646.0, 643.0, 644.0, 643.0, 642.0, 643.0, 642.0, 642.0, 643.0, 642.0, 627.0, 641.0, 635.0, 641.0, 632.0, 616.0, 650.0, 641.0, 644.0, 647.0, 642.0, 638.0, 645.0, 646.0, 646.0, 646.0, 646.0, 646.0, 646.0, 634.0, 646.0, 637.0, 646.0, 640.0, 633.0, 640.0, 619.0, 640.0, 646.0, 641.0, 619.0, 624.0, 631.0, 645.0, 623.0, 641.0, 610.0, 655.0, 648.0, 648.0, 647.0, 620.0, 635.0, 642.0, 616.0, 647.0, 645.0, 640.0, 640.0, 640.0, 641.0, 637.0, 629.0, 628.0, 630.0, 632.0, 638.0, 643.0, 638.0, 626.0, 632.0, 631.0, 626.0, 624.0, 632.0, 627.0, 630.0, 634.0, 627.0, 634.0, 630.0, 637.0, 635.0, 637.0, 638.0, 640.0, 642.0, 643.0, 643.0, 615.0, 649.0, 642.0, 646.0, 646.0, 625.0, 632.0, 638.0, 629.0], 'WindowWidth': [1377.0, 1374.0, 1374.0, 1332.0, 1381.0, 1370.0, 1368.0, 1347.0, 1386.0, 1375.0, 1374.0, 1373.0, 1372.0, 1327.0, 1387.0, 1374.0, 1369.0, 1367.0, 1370.0, 1371.0, 1371.0, 1375.0, 1353.0, 1349.0, 1371.0, 1381.0, 1327.0, 1357.0, 1329.0, 1404.0, 1384.0, 1378.0, 1367.0, 1309.0, 1383.0, 1364.0, 1376.0, 1376.0, 1377.0, 1380.0, 1340.0, 1370.0, 1389.0, 1365.0, 1376.0, 1372.0, 1363.0, 1322.0, 1361.0, 1341.0, 1347.0, 1374.0, 1374.0, 1380.0, 1388.0, 1369.0, 1316.0, 1362.0, 1322.0, 1311.0, 1394.0, 1383.0, 1337.0, 1377.0, 1390.0, 1391.0, 1399.0, 1392.0, 1394.0, 1391.0, 1388.0, 1391.0, 1390.0, 1389.0, 1391.0, 1388.0, 1347.0, 1384.0, 1369.0, 1386.0, 1359.0, 1325.0, 1412.0, 1389.0, 1396.0, 1401.0, 1390.0, 1381.0, 1399.0, 1401.0, 1401.0, 1400.0, 1402.0, 1402.0, 1402.0, 1368.0, 1400.0, 1377.0, 1399.0, 1384.0, 1366.0, 1385.0, 1329.0, 1381.0, 1397.0, 1385.0, 1328.0, 1340.0, 1356.0, 1395.0, 1339.0, 1389.0, 1307.0, 1426.0, 1404.0, 1405.0, 1404.0, 1334.0, 1369.0, 1388.0, 1322.0, 1401.0, 1397.0, 1383.0, 1385.0, 1385.0, 1387.0, 1378.0, 1353.0, 1353.0, 1356.0, 1364.0, 1379.0, 1392.0, 1377.0, 1348.0, 1362.0, 1358.0, 1347.0, 1341.0, 1363.0, 1347.0, 1356.0, 1368.0, 1347.0, 1365.0, 1359.0, 1375.0, 1370.0, 1376.0, 1379.0, 1383.0, 1389.0, 1392.0, 1393.0, 1318.0, 1407.0, 1391.0, 1399.0, 1400.0, 1345.0, 1361.0, 1377.0, 1352.0]}, 'slices': {}}

aor0.019734268292682926
aqi0.28661266463414636
dummy_trs0
dvarsnstd121.96489131061347
dvarsstd0.9925901962576689
dvarsvstd1.0045246986503071
efc0.4127
fber52859.4961
fdmean3.2279551791535077
fdnum155
fdperc94.51219512195122
fwhmavg2.811391328285259
fwhmx2.639575
fwhmy2.95605
fwhmz2.838548984855777
gcor0.078861
gsrx-0.03156076371669769
gsry0.014250892214477062
sizet164
sizex64
sizey64
sizez32
snr6.227460608137593
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.000001430511475
summarybgk26.931
summarybgmad2.4861
summarybgmean27.1071
summarybgmedian3.0
summarybgn109466.0
summarybgp051.0
summarybgp95159.0
summarybgstdv75.6492
summaryfgk2.8673
summaryfgmad94.43
summaryfgmean774.0957
summaryfgmedian788.0
summaryfgn21606.0
summaryfgp05520.0
summaryfgp95947.0
summaryfgstdv126.5334
tsnr9.259898262564093
Rating widget

  • Exclude
  • Poor
  • Acceptable
  • Excellent

Comments

Rater confidence

  • Doubtful
  • Confident
Download