Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS225/figures/sub-CTS225_task-restfixationfixed_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS225/figures/sub-CTS225_task-restfixationfixed_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS225/figures/sub-CTS225_task-restfixationfixed_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS225/figures/sub-CTS225_task-restfixationfixed_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS225/figures/sub-CTS225_task-restfixationfixed_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS225/figures/sub-CTS225_task-restfixationfixed_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS225/figures/sub-CTS225_task-restfixationfixed_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS225/figures/sub-CTS225_task-restfixationfixed_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS225/func/sub-CTS225_task-restfixationfixed_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum1801bebd0e9043fced0622df705880ab

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime14:13:52.762500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.998027, 0.0455957, 0.0431735, -0.056165, 0.955658, 0.289074]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_nonad_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.15792
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_nonad_rest
SeriesNumber9
ShimSetting[-212, -19588, 8007, 441, 122, -326, -139, -25]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.08, 1.4125, 0.1575, 1.49, 0.235, 1.57, 0.315, 1.6475, 0.3925, 1.725, 0.47, 1.805, 0.55, 1.8825, 0.6275, 1.96, 0.705, 2.04, 0.785, 2.1175, 0.8625, 2.195, 0.9425, 2.275, 1.02, 2.3525, 1.0975, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationfixed
TotalReadoutTime0.0371701
TxRefAmp343.009
dcmmetaaffine[[-3.9921064376831055, -0.22466008365154266, 0.11231432110071182, 136.10104370117188], [-0.18238267302513123, 3.8226311206817627, 1.163712739944458, -115.7879638671875], [0.17269401252269745, -1.1562951803207397, 3.825331211090088, 13.105631828308105], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0027964634146341464
aqi0.0056873229268292694
dummy_trs0
dvarsnstd16.95701042736197
dvarsstd1.2617161158895707
dvarsvstd0.9928605966871165
efc0.409
fber48375.332
fdmean0.07580199305425202
fdnum1
fdperc0.6097560975609756
fwhmavg2.054676666666667
fwhmx2.0026125
fwhmy2.2449375
fwhmz1.91648
gcor0.0480353
gsrx-0.017896942794322968
gsry0.002473121276125312
sizet164
sizex64
sizey64
sizez32
snr4.5136671242244235
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.0
summarybgk42.9931
summarybgmad2.2239
summarybgmean23.7047
summarybgmedian3.0
summarybgn109312.0
summarybgp051.0
summarybgp95125.0
summarybgstdv66.161
summaryfgk2.8174
summaryfgmad107.2039
summaryfgmean681.7578
summaryfgmedian705.0
summaryfgn21760.0
summaryfgp05346.0
summaryfgp95876.0
summaryfgstdv156.1887
tsnr95.79310545115732
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