Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationnofeedback_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationnofeedback_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationnofeedback_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationnofeedback_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationnofeedback_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationnofeedback_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS223/figures/sub-CTS223_task-restfixationnofeedback_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationnofeedback_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS223/func/sub-CTS223_task-restfixationnofeedback_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum58117fce4aee8e24af4c1dea936c2f91

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime16:35:41.705000
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.998355, 0.0435742, 0.037263, -0.0487645, 0.987152, 0.152161]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest2
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.141138
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest2
SeriesNumber11
ShimSetting[-246, -19610, 8015, 466, -98, -597, 473, 205]
SliceThickness4
SliceTiming[1.255, 0, 1.335, 0.08, 1.4125, 0.1575, 1.49, 0.235, 1.57, 0.315, 1.6475, 0.3925, 1.725, 0.4725, 1.805, 0.55, 1.8825, 0.6275, 1.9625, 0.7075, 2.04, 0.785, 2.1175, 0.8625, 2.1975, 0.9425, 2.275, 1.02, 2.3525, 1.1, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationnofeedback
TotalReadoutTime0.0371701
TxRefAmp300.411
dcmmetaaffine[[-3.993420124053955, -0.19505809247493744, 0.12061609327793121, 133.52166748046875], [-0.17429672181606293, 3.948608160018921, 0.6149094104766846, -127.9537582397461], [0.1490521878004074, -0.6086421012878418, 3.9506125450134277, -5.128543853759766], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'AcquisitionTime': ['163541.705000', '163544.215000', '163546.725000', '163549.235000', '163551.745000', '163554.255000', '163556.765000', '163559.275000', '163601.785000', '163604.295000', '163606.805000', '163609.315000', '163611.825000', '163614.335000', '163616.845000', '163619.355000', '163621.867500', '163624.377500', '163626.887500', '163629.397500', '163631.907500', '163634.417500', '163636.927500', '163639.437500', '163641.947500', '163644.457500', '163646.967500', '163649.477500', '163651.987500', '163654.497500', '163657.007500', '163659.517500', '163702.027500', '163704.537500', '163707.047500', '163709.557500', '163712.067500', '163714.577500', '163717.087500', '163719.597500', '163722.107500', '163724.617500', '163727.127500', '163729.637500', '163732.147500', '163734.657500', '163737.167500', '163739.677500', '163742.187500', '163744.697500', '163747.207500', '163749.717500', '163752.227500', '163754.737500', '163757.247500', '163759.757500', '163802.267500', '163804.777500', '163807.287500', '163809.797500', '163812.307500', '163814.817500', '163817.327500', '163819.837500', '163822.347500', '163824.857500', '163827.367500', '163829.877500', '163832.387500', '163834.897500', '163837.407500', '163839.917500', '163842.427500', '163844.937500', '163847.447500', '163849.957500', '163852.467500', '163854.977500', '163857.490000', '163900.000000', '163902.510000', '163905.020000', '163907.530000', '163910.040000', '163912.550000', '163915.060000', '163917.570000', '163920.080000', '163922.590000', '163925.100000', '163927.610000', '163930.120000', '163932.630000', '163935.140000', '163937.650000', '163940.160000', '163942.670000', '163945.180000', '163947.690000', '163950.200000', '163952.710000', '163955.220000', '163957.730000', '164000.240000', '164002.750000', '164005.260000', '164007.770000', '164010.280000', '164012.790000', '164015.300000', '164017.810000', '164020.320000', '164022.830000', '164025.340000', '164027.850000', '164030.360000', '164032.870000', '164035.380000', '164037.890000', '164040.400000', '164042.910000', '164045.420000', '164047.930000', '164050.440000', '164052.950000', '164055.460000', '164057.970000', '164100.480000', '164102.990000', '164105.500000', '164108.010000', '164110.520000', '164113.030000', '164115.540000', '164118.050000', '164120.560000', '164123.070000', '164125.580000', '164128.090000', '164130.600000', '164133.110000', '164135.622500', '164138.132500', '164140.642500', '164143.152500', '164145.662500', '164148.172500', '164150.682500', '164153.192500', '164155.702500', '164158.212500', '164200.722500', '164203.232500', '164205.742500', '164208.252500', '164210.762500', '164213.272500', '164215.782500', '164218.292500', '164220.802500', '164223.312500', '164225.822500', '164228.332500', '164230.842500'], 'ContentTime': ['163544.906000', '163547.406000', '163549.906000', '163552.406000', '163554.906000', '163557.406000', '163559.906000', '163602.406000', '163604.906000', '163607.406000', '163609.906000', '163612.406000', '163614.906000', '163617.406000', '163619.906000', '163622.406000', '163624.906000', '163627.406000', '163629.906000', '163632.406000', '163634.906000', '163637.406000', '163639.906000', '163642.406000', '163644.906000', '163647.406000', '163649.906000', '163652.406000', '163654.906000', '163657.406000', '163659.906000', '163702.406000', '163704.906000', '163707.406000', '163709.906000', '163712.406000', '163714.906000', '163717.406000', '163719.906000', '163722.406000', '163724.906000', '163727.406000', '163729.906000', '163732.406000', '163734.906000', '163737.406000', '163739.906000', '163742.406000', '163744.906000', '163747.406000', '163749.906000', '163752.406000', '163754.906000', '163757.406000', '163759.906000', '163802.406000', '163804.906000', '163807.406000', '163809.906000', '163812.406000', '163814.906000', '163817.406000', '163819.906000', '163822.406000', '163824.906000', '163827.406000', '163829.906000', '163832.406000', '163834.906000', '163837.406000', '163839.906000', '163842.406000', '163844.906000', '163847.406000', '163849.906000', '163852.406000', '163854.906000', '163857.406000', '163859.906000', '163902.406000', '163904.906000', '163907.406000', '163909.906000', '163912.406000', '163914.906000', '163917.406000', '163919.906000', '163922.406000', '163924.906000', '163927.406000', '163929.906000', '163932.406000', '163934.906000', '163937.406000', '163939.906000', '163942.406000', '163944.906000', '163947.406000', '163949.906000', '163952.406000', '163954.906000', '163957.406000', '163959.906000', '164002.406000', '164004.906000', '164007.406000', '164009.906000', '164012.406000', '164014.906000', '164017.406000', '164019.906000', '164022.406000', '164024.906000', '164027.406000', '164029.906000', '164032.406000', '164034.906000', '164037.406000', '164039.906000', '164042.406000', '164044.906000', '164047.406000', '164049.906000', '164052.406000', '164054.906000', '164057.406000', '164059.906000', '164102.406000', '164104.906000', '164107.406000', '164109.906000', '164112.406000', '164114.906000', '164117.406000', '164119.906000', '164122.406000', '164124.906000', '164127.406000', '164129.906000', '164132.406000', '164134.906000', '164137.406000', '164139.906000', '164142.406000', '164144.906000', '164147.406000', '164149.906000', '164152.406000', '164154.906000', '164157.406000', '164159.906000', '164202.406000', '164204.906000', '164207.406000', '164209.906000', '164212.406000', '164214.906000', '164217.406000', '164219.906000', '164222.406000', '164224.906000', '164227.406000', '164229.906000', '164232.078000'], 'InstanceCreationTime': ['163544.906000', '163547.406000', '163549.906000', '163552.406000', '163554.906000', '163557.406000', '163559.906000', '163602.406000', '163604.906000', '163607.406000', '163609.906000', '163612.406000', '163614.906000', '163617.406000', '163619.906000', '163622.406000', '163624.906000', '163627.406000', '163629.906000', '163632.406000', '163634.906000', '163637.406000', '163639.906000', '163642.406000', '163644.906000', '163647.406000', '163649.906000', '163652.406000', '163654.906000', '163657.406000', '163659.906000', '163702.406000', '163704.906000', '163707.406000', '163709.906000', '163712.406000', '163714.906000', '163717.406000', '163719.906000', '163722.406000', '163724.906000', '163727.406000', '163729.906000', '163732.406000', '163734.906000', '163737.406000', '163739.906000', '163742.406000', '163744.906000', '163747.406000', '163749.906000', '163752.406000', '163754.906000', '163757.406000', '163759.906000', '163802.406000', '163804.906000', '163807.406000', '163809.906000', '163812.406000', '163814.906000', '163817.406000', '163819.906000', '163822.406000', '163824.906000', '163827.406000', '163829.906000', '163832.406000', '163834.906000', '163837.406000', '163839.906000', '163842.406000', '163844.906000', '163847.406000', '163849.906000', '163852.406000', '163854.906000', '163857.406000', '163859.906000', '163902.406000', '163904.906000', '163907.406000', '163909.906000', '163912.406000', '163914.906000', '163917.406000', '163919.906000', '163922.406000', '163924.906000', '163927.406000', '163929.906000', '163932.406000', '163934.906000', '163937.406000', '163939.906000', '163942.406000', '163944.906000', '163947.406000', '163949.906000', '163952.406000', '163954.906000', '163957.406000', '163959.906000', '164002.406000', '164004.906000', '164007.406000', '164009.906000', '164012.406000', '164014.906000', '164017.406000', '164019.906000', '164022.406000', '164024.906000', '164027.406000', '164029.906000', '164032.406000', '164034.906000', '164037.406000', '164039.906000', '164042.406000', '164044.906000', '164047.406000', '164049.906000', '164052.406000', '164054.906000', '164057.406000', '164059.906000', '164102.406000', '164104.906000', '164107.406000', '164109.906000', '164112.406000', '164114.906000', '164117.406000', '164119.906000', '164122.406000', '164124.906000', '164127.406000', '164129.906000', '164132.406000', '164134.906000', '164137.406000', '164139.906000', '164142.406000', '164144.906000', '164147.406000', '164149.906000', '164152.406000', '164154.906000', '164157.406000', '164159.906000', '164202.406000', '164204.906000', '164207.406000', '164209.906000', '164212.406000', '164214.906000', '164217.406000', '164219.906000', '164222.406000', '164224.906000', '164227.406000', '164229.906000', '164232.078000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'LargestImagePixelValue': [2064, 1905, 1631, 2002, 2111, 2049, 1847, 1825, 1776, 1735, 1775, 1836, 1901, 1907, 1935, 1728, 1587, 1690, 1940, 2150, 2199, 2045, 1778, 1783, 2058, 2134, 2067, 1784, 1625, 1696, 1735, 1659, 1664, 1776, 2098, 1932, 1679, 1712, 1830, 1886, 1687, 1609, 1773, 1973, 2074, 2091, 1954, 1941, 2059, 1867, 1937, 1759, 1819, 1845, 1609, 1591, 1864, 1926, 2127, 2043, 1738, 1603, 1806, 1878, 1864, 1688, 1651, 2025, 2114, 2161, 1960, 1830, 1886, 1554, 1719, 1895, 1809, 1544, 1618, 1962, 2257, 1851, 1576, 1544, 1839, 1986, 1667, 1664, 1894, 2085, 2339, 1955, 1738, 1597, 1808, 1818, 1698, 1533, 1577, 1851, 2292, 1736, 1738, 1933, 2062, 1700, 1537, 1574, 1984, 1886, 1783, 1840, 1690, 1530, 1680, 2164, 2188, 1683, 1745, 1897, 1728, 1772, 2035, 1862, 1529, 1627, 1543, 1519, 1759, 1894, 2014, 2088, 2266, 2066, 2005, 2027, 1836, 1885, 2024, 1885, 1659, 1632, 1605, 1601, 1977, 2480, 1670, 1604, 1749, 1778, 1612, 1779, 1951, 1678, 1814, 1938, 1655, 1871, 1733, 1704, 1807, 2151, 2170, 2036], 'WindowCenter': [685.0, 683.0, 681.0, 683.0, 683.0, 684.0, 681.0, 682.0, 682.0, 683.0, 684.0, 683.0, 682.0, 681.0, 682.0, 682.0, 682.0, 683.0, 682.0, 683.0, 683.0, 681.0, 682.0, 681.0, 681.0, 683.0, 682.0, 683.0, 679.0, 682.0, 682.0, 682.0, 683.0, 683.0, 683.0, 681.0, 681.0, 683.0, 682.0, 683.0, 682.0, 682.0, 682.0, 684.0, 683.0, 683.0, 682.0, 683.0, 683.0, 683.0, 684.0, 683.0, 683.0, 682.0, 681.0, 683.0, 682.0, 681.0, 681.0, 682.0, 683.0, 682.0, 682.0, 681.0, 682.0, 682.0, 682.0, 684.0, 683.0, 685.0, 682.0, 682.0, 681.0, 681.0, 684.0, 683.0, 683.0, 679.0, 683.0, 683.0, 683.0, 682.0, 681.0, 685.0, 685.0, 683.0, 684.0, 683.0, 683.0, 682.0, 682.0, 682.0, 682.0, 680.0, 681.0, 683.0, 684.0, 683.0, 684.0, 684.0, 685.0, 683.0, 682.0, 684.0, 683.0, 682.0, 681.0, 684.0, 685.0, 683.0, 682.0, 684.0, 684.0, 683.0, 684.0, 682.0, 683.0, 683.0, 682.0, 683.0, 682.0, 683.0, 682.0, 682.0, 682.0, 681.0, 682.0, 683.0, 682.0, 685.0, 685.0, 687.0, 685.0, 686.0, 683.0, 680.0, 681.0, 682.0, 682.0, 683.0, 683.0, 681.0, 683.0, 684.0, 684.0, 685.0, 680.0, 680.0, 683.0, 683.0, 683.0, 684.0, 685.0, 683.0, 681.0, 681.0, 681.0, 683.0, 685.0, 684.0, 684.0, 685.0, 683.0, 683.0], 'WindowWidth': [1492.0, 1486.0, 1482.0, 1486.0, 1487.0, 1487.0, 1482.0, 1484.0, 1483.0, 1485.0, 1487.0, 1486.0, 1485.0, 1483.0, 1484.0, 1484.0, 1484.0, 1485.0, 1483.0, 1486.0, 1486.0, 1482.0, 1483.0, 1482.0, 1483.0, 1486.0, 1482.0, 1483.0, 1477.0, 1482.0, 1483.0, 1483.0, 1485.0, 1485.0, 1485.0, 1483.0, 1481.0, 1485.0, 1484.0, 1486.0, 1484.0, 1483.0, 1485.0, 1488.0, 1487.0, 1486.0, 1484.0, 1487.0, 1487.0, 1487.0, 1488.0, 1486.0, 1486.0, 1483.0, 1481.0, 1485.0, 1484.0, 1482.0, 1483.0, 1483.0, 1486.0, 1483.0, 1483.0, 1481.0, 1484.0, 1483.0, 1484.0, 1488.0, 1487.0, 1491.0, 1485.0, 1484.0, 1481.0, 1483.0, 1487.0, 1485.0, 1485.0, 1477.0, 1485.0, 1486.0, 1487.0, 1485.0, 1482.0, 1490.0, 1491.0, 1487.0, 1487.0, 1486.0, 1485.0, 1483.0, 1483.0, 1482.0, 1483.0, 1478.0, 1482.0, 1486.0, 1487.0, 1485.0, 1487.0, 1489.0, 1491.0, 1486.0, 1485.0, 1488.0, 1486.0, 1483.0, 1482.0, 1488.0, 1492.0, 1488.0, 1485.0, 1487.0, 1487.0, 1485.0, 1489.0, 1486.0, 1486.0, 1485.0, 1484.0, 1486.0, 1484.0, 1485.0, 1484.0, 1483.0, 1483.0, 1483.0, 1486.0, 1486.0, 1485.0, 1492.0, 1491.0, 1497.0, 1493.0, 1491.0, 1487.0, 1480.0, 1482.0, 1483.0, 1484.0, 1486.0, 1485.0, 1481.0, 1487.0, 1487.0, 1488.0, 1489.0, 1479.0, 1479.0, 1487.0, 1487.0, 1486.0, 1488.0, 1490.0, 1485.0, 1481.0, 1482.0, 1482.0, 1488.0, 1491.0, 1489.0, 1490.0, 1490.0, 1486.0, 1485.0]}, 'slices': {}}

aor0.0023882208588957054
aqi0.005614328588957055
dummy_trs1
dvarsnstd14.876442879629627
dvarsstd1.2117521835185185
dvarsvstd0.9963207006172842
efc0.4462
fber44672.25
fdmean0.07997914236199834
fdnum5
fdperc3.067484662576687
fwhmavg2.1354625
fwhmx2.0980775
fwhmy2.3611475
fwhmz1.9471625
gcor0.0322783
gsrx-0.025613028556108475
gsry0.024811115115880966
sizet163
sizex64
sizey64
sizez32
snr4.688058721037515
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.0
summarybgk43.576
summarybgmad3.2199
summarybgmean32.0723
summarybgmedian4.0
summarybgn104988.0
summarybgp051.0
summarybgp95170.0
summarybgstdv86.3315
summaryfgk3.5626
summaryfgmad124.6978
summaryfgmean838.2973
summaryfgmedian864.0
summaryfgn26084.0
summaryfgp05449.0
summaryfgp951069.0
summaryfgstdv184.2945
tsnr101.42141124047339
Rating widget

  • Exclude
  • Poor
  • Acceptable
  • Excellent

Comments

Rater confidence

  • Doubtful
  • Confident
Download