Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationfixed_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationfixed_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationfixed_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationfixed_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationfixed_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationfixed_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS223/figures/sub-CTS223_task-restfixationfixed_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS223/figures/sub-CTS223_task-restfixationfixed_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS223/func/sub-CTS223_task-restfixationfixed_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5suma0335c04d8df46fcc060ec77ca8f7209

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime16:27:58.732500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.998355, 0.0435742, 0.037263, -0.0487645, 0.987152, 0.152161]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_feedback_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.141138
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_feedback_rest
SeriesNumber10
ShimSetting[-246, -19610, 8015, 466, -98, -597, 473, 205]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.41, 0.155, 1.49, 0.235, 1.5675, 0.3125, 1.645, 0.39, 1.725, 0.47, 1.8025, 0.5475, 1.8825, 0.6275, 1.96, 0.705, 2.0375, 0.7825, 2.1175, 0.8625, 2.195, 0.94, 2.2725, 1.0175, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationfixed
TotalReadoutTime0.0371701
TxRefAmp300.411
dcmmetaaffine[[-3.993420124053955, -0.19505809247493744, 0.12061609327793121, 133.52166748046875], [-0.17429672181606293, 3.948608160018921, 0.6149094104766846, -127.9537582397461], [0.1490521878004074, -0.6086421012878418, 3.9506125450134277, -5.128543853759766], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'AcquisitionTime': ['162758.732500', '162801.242500', '162803.752500', '162806.262500', '162808.772500', '162811.282500', '162813.792500', '162816.302500', '162818.812500', '162821.322500', '162823.832500', '162826.342500', '162828.852500', 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aor0.0028778048780487807
aqi0.003931564634146341
dummy_trs0
dvarsnstd12.573452112699387
dvarsstd1.1969373006134967
dvarsvstd1.002666648282209
efc0.446
fber44523.5156
fdmean0.05967074147829407
fdnum7
fdperc4.2682926829268295
fwhmavg2.117635833333333
fwhmx2.0775175
fwhmy2.34149
fwhmz1.9339
gcor0.0161711
gsrx-0.026262449100613594
gsry0.022610271349549294
sizet164
sizex64
sizey64
sizez32
snr4.726698244885429
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.0
summarybgk43.1658
summarybgmad3.2274
summarybgmean32.7577
summarybgmedian4.0
summarybgn105139.0
summarybgp051.0
summarybgp95172.0
summarybgstdv89.5159
summaryfgk3.6079
summaryfgmad124.2855
summaryfgmean837.8893
summaryfgmedian862.0
summaryfgn25933.0
summaryfgp05456.0
summaryfgp951068.0
summaryfgstdv182.3648
tsnr124.57543526217341
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