Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS219/figures/sub-CTS219_task-restfixationadaptive_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS219/figures/sub-CTS219_task-restfixationadaptive_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS219/figures/sub-CTS219_task-restfixationadaptive_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS219/figures/sub-CTS219_task-restfixationadaptive_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS219/figures/sub-CTS219_task-restfixationadaptive_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS219/figures/sub-CTS219_task-restfixationadaptive_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS219/figures/sub-CTS219_task-restfixationadaptive_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS219/figures/sub-CTS219_task-restfixationadaptive_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS219/func/sub-CTS219_task-restfixationadaptive_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum06e7499bd03d38d81b3d3cfd2c6ed1cd

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime10:23:43.102500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.999462, -0.000624351, -0.0327962, 0.00397798, 0.994747, 0.102292]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_ad_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.139755
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_ad_rest
SeriesNumber10
ShimSetting[-250, -19654, 7962, 97, 61, -423, -82, 127]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.4125, 0.1575, 1.49, 0.235, 1.5675, 0.315, 1.6475, 0.3925, 1.725, 0.47, 1.805, 0.55, 1.8825, 0.6275, 1.96, 0.705, 2.04, 0.785, 2.1175, 0.8625, 2.195, 0.9425, 2.275, 1.02, 2.3525, 1.0975, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationadaptive
TotalReadoutTime0.0371701
TxRefAmp318.717
dcmmetaaffine[[-3.997847557067871, 0.01591193862259388, -0.13024021685123444, 126.95643615722656], [0.0024974020197987556, 3.9789860248565674, 0.40946781635284424, -128.20947265625], [-0.13118481636047363, -0.4091660678386688, 3.976855754852295, 0.2603847086429596], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'AcquisitionTime': ['102343.102500', '102345.612500', '102348.122500', '102350.632500', '102353.142500', '102355.652500', '102358.162500', '102400.672500', '102403.182500', '102405.692500', '102408.202500', '102410.712500', '102413.222500', '102415.732500', '102418.242500', '102420.752500', '102423.262500', '102425.772500', '102428.282500', '102430.792500', '102433.302500', '102435.812500', '102438.322500', '102440.832500', '102443.342500', '102445.852500', '102448.362500', '102450.872500', '102453.382500', '102455.892500', '102458.402500', '102500.912500', '102503.425000', '102505.935000', '102508.445000', '102510.955000', '102513.465000', '102515.975000', '102518.485000', '102520.995000', '102523.505000', '102526.015000', '102528.525000', '102531.035000', '102533.545000', '102536.055000', '102538.565000', '102541.075000', '102543.585000', '102546.095000', '102548.605000', '102551.115000', '102553.625000', '102556.135000', '102558.645000', '102601.155000', '102603.665000', '102606.175000', '102608.685000', '102611.195000', '102613.705000', '102616.215000', '102618.725000', '102621.235000', '102623.745000', '102626.255000', '102628.765000', '102631.275000', '102633.785000', '102636.295000', '102638.805000', '102641.315000', '102643.825000', '102646.335000', '102648.845000', '102651.355000', '102653.865000', '102656.375000', '102658.885000', '102701.395000', '102703.905000', '102706.415000', '102708.925000', '102711.435000', '102713.945000', '102716.455000', '102718.965000', '102721.475000', '102723.985000', '102726.495000', '102729.005000', '102731.515000', '102734.025000', '102736.535000', '102739.045000', '102741.557500', '102744.067500', '102746.577500', '102749.087500', '102751.597500', '102754.107500', '102756.617500', '102759.127500', '102801.637500', '102804.147500', '102806.657500', '102809.167500', '102811.677500', '102814.187500', '102816.697500', '102819.207500', '102821.717500', '102824.227500', '102826.737500', '102829.247500', '102831.757500', '102834.267500', '102836.777500', '102839.287500', '102841.797500', '102844.307500', '102846.817500', '102849.327500', '102851.837500', '102854.347500', '102856.857500', '102859.367500', '102901.877500', '102904.387500', '102906.897500', '102909.407500', '102911.917500', '102914.427500', '102916.937500', '102919.447500', '102921.957500', '102924.467500', '102926.977500', '102929.487500', '102931.997500', '102934.507500', '102937.017500', '102939.527500', '102942.037500', '102944.547500', '102947.057500', '102949.567500', '102952.077500', '102954.587500', '102957.097500', '102959.607500', '103002.117500', '103004.627500', '103007.137500', '103009.647500', '103012.157500', '103014.667500', '103017.180000', '103019.690000', '103022.200000', '103024.710000', '103027.220000', '103029.730000', '103032.240000'], 'ContentTime': ['102345.406000', '102347.906000', '102350.406000', '102352.906000', '102355.406000', '102357.906000', '102400.406000', '102402.906000', '102405.406000', '102407.906000', '102410.406000', '102412.906000', '102415.406000', '102417.906000', '102420.406000', '102422.906000', '102425.406000', '102427.906000', '102430.406000', '102432.906000', '102435.406000', '102437.906000', '102440.406000', '102442.906000', '102445.406000', '102447.906000', '102450.406000', '102452.906000', '102455.406000', '102457.906000', '102500.406000', '102502.906000', '102505.406000', '102507.906000', '102510.406000', '102512.906000', '102515.406000', '102517.906000', '102520.406000', '102522.906000', '102525.406000', '102527.906000', '102530.406000', '102532.906000', '102535.406000', '102537.906000', '102540.406000', '102542.906000', '102545.406000', '102547.906000', '102550.406000', '102552.906000', '102555.406000', '102557.906000', '102600.406000', '102602.906000', '102605.406000', '102607.906000', '102610.406000', '102612.906000', '102615.406000', '102617.906000', '102620.406000', '102622.906000', '102625.406000', '102627.906000', '102630.406000', '102632.906000', '102635.406000', '102637.906000', '102640.406000', '102642.906000', '102645.406000', '102647.906000', '102650.406000', '102652.906000', '102655.406000', '102657.906000', '102700.406000', '102702.906000', '102705.406000', '102707.906000', '102710.406000', '102712.906000', '102715.406000', '102717.906000', '102720.406000', '102722.906000', '102725.406000', '102727.906000', '102730.406000', '102732.906000', '102735.406000', '102737.906000', '102740.406000', '102742.906000', '102745.406000', '102747.906000', '102750.406000', '102752.906000', '102755.406000', '102757.906000', '102800.406000', '102802.906000', '102805.406000', '102807.906000', '102810.406000', '102812.906000', '102815.406000', '102817.906000', '102820.406000', '102822.906000', '102825.406000', '102827.906000', '102830.406000', '102832.906000', '102835.406000', '102837.906000', '102840.406000', '102842.906000', '102845.406000', '102847.906000', '102850.406000', '102852.906000', '102855.406000', '102857.906000', '102900.406000', '102902.906000', '102905.406000', '102907.906000', '102910.406000', '102912.906000', '102915.406000', '102917.906000', '102920.406000', '102922.906000', '102925.406000', '102927.906000', '102930.406000', '102932.906000', '102935.406000', '102937.906000', '102940.406000', '102942.906000', '102945.406000', '102947.906000', '102950.406000', '102952.906000', '102955.406000', '102957.906000', '103000.406000', '103002.906000', '103005.406000', '103007.906000', '103010.406000', '103012.906000', '103015.406000', '103017.906000', '103020.406000', '103022.906000', '103025.406000', '103027.906000', '103030.406000', '103032.703000'], 'InstanceCreationTime': ['102345.406000', '102347.906000', '102350.406000', '102352.906000', '102355.406000', '102357.906000', '102400.406000', '102402.906000', '102405.406000', '102407.906000', '102410.406000', '102412.906000', '102415.406000', '102417.906000', '102420.406000', '102422.906000', '102425.406000', '102427.906000', '102430.406000', '102432.906000', '102435.406000', '102437.906000', '102440.406000', '102442.906000', '102445.406000', '102447.906000', '102450.406000', '102452.906000', '102455.406000', '102457.906000', '102500.406000', '102502.906000', '102505.406000', '102507.906000', '102510.406000', '102512.906000', '102515.406000', '102517.906000', '102520.406000', '102522.906000', '102525.406000', '102527.906000', '102530.406000', '102532.906000', '102535.406000', '102537.906000', '102540.406000', '102542.906000', '102545.406000', '102547.906000', '102550.406000', '102552.906000', '102555.406000', '102557.906000', '102600.406000', '102602.906000', '102605.406000', '102607.906000', '102610.406000', '102612.906000', '102615.406000', '102617.906000', '102620.406000', '102622.906000', '102625.406000', '102627.906000', '102630.406000', '102632.906000', '102635.406000', '102637.906000', '102640.406000', '102642.906000', '102645.406000', '102647.906000', '102650.406000', '102652.906000', '102655.406000', '102657.906000', '102700.406000', '102702.906000', '102705.406000', '102707.906000', '102710.406000', '102712.906000', '102715.406000', '102717.906000', '102720.406000', '102722.906000', '102725.406000', '102727.906000', '102730.406000', '102732.906000', '102735.406000', '102737.906000', '102740.406000', '102742.906000', '102745.406000', '102747.906000', '102750.406000', '102752.906000', '102755.406000', '102757.906000', '102800.406000', '102802.906000', '102805.406000', '102807.906000', '102810.406000', '102812.906000', '102815.406000', '102817.906000', '102820.406000', '102822.906000', '102825.406000', '102827.906000', '102830.406000', '102832.906000', '102835.406000', '102837.906000', '102840.406000', '102842.906000', '102845.406000', '102847.906000', '102850.406000', '102852.906000', '102855.406000', '102857.906000', '102900.406000', '102902.906000', '102905.406000', '102907.906000', '102910.406000', '102912.906000', '102915.406000', '102917.906000', '102920.406000', '102922.906000', '102925.406000', '102927.906000', '102930.406000', '102932.906000', '102935.406000', '102937.906000', '102940.406000', '102942.906000', '102945.406000', '102947.906000', '102950.406000', '102952.906000', '102955.406000', '102957.906000', '103000.406000', '103002.906000', '103005.406000', '103007.906000', '103010.406000', '103012.906000', '103015.406000', '103017.906000', '103020.406000', '103022.906000', '103025.406000', '103027.906000', '103030.406000', '103032.703000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'LargestImagePixelValue': [1274, 1204, 1214, 1223, 1227, 1193, 1210, 1197, 1214, 1212, 1208, 1250, 1298, 1217, 1238, 1198, 1191, 1233, 1219, 1185, 1237, 1216, 1225, 1206, 1203, 1222, 1209, 1231, 1186, 1270, 1222, 1188, 1192, 1197, 1201, 1193, 1189, 1255, 1211, 1191, 1205, 1243, 1181, 1275, 1229, 1260, 1205, 1181, 1186, 1179, 1174, 1194, 1195, 1180, 1204, 1183, 1175, 1242, 1194, 1178, 1200, 1228, 1200, 1200, 1230, 1199, 1211, 1190, 1197, 1170, 1175, 1198, 1258, 1186, 1200, 1211, 1224, 1209, 1185, 1177, 1195, 1199, 1225, 1182, 1188, 1198, 1220, 1188, 1184, 1177, 1208, 1171, 1188, 1170, 1175, 1188, 1178, 1195, 1184, 1168, 1181, 1166, 1161, 1162, 1258, 1188, 1181, 1176, 1162, 1164, 1196, 1251, 1207, 1174, 1165, 1218, 1260, 1163, 1167, 1169, 1236, 1250, 1176, 1207, 1221, 1238, 1168, 1186, 1196, 1198, 1190, 1188, 1218, 1208, 1191, 1295, 1206, 1200, 1182, 1217, 1202, 1216, 1180, 1252, 1194, 1184, 1301, 1190, 1189, 1249, 1276, 1197, 1180, 1170, 1448, 1195, 1179, 1186, 1202, 1195, 1220, 1186, 1209, 1210], 'WindowCenter': [570.0, 568.0, 569.0, 568.0, 567.0, 568.0, 568.0, 568.0, 568.0, 569.0, 568.0, 570.0, 570.0, 568.0, 569.0, 567.0, 567.0, 568.0, 568.0, 567.0, 569.0, 567.0, 567.0, 568.0, 568.0, 566.0, 567.0, 569.0, 568.0, 569.0, 568.0, 568.0, 567.0, 567.0, 567.0, 567.0, 566.0, 568.0, 567.0, 568.0, 567.0, 567.0, 567.0, 569.0, 570.0, 569.0, 568.0, 566.0, 567.0, 567.0, 567.0, 567.0, 568.0, 566.0, 568.0, 568.0, 567.0, 568.0, 568.0, 567.0, 566.0, 568.0, 566.0, 565.0, 567.0, 565.0, 567.0, 567.0, 567.0, 566.0, 566.0, 568.0, 567.0, 567.0, 568.0, 567.0, 567.0, 567.0, 565.0, 567.0, 568.0, 568.0, 566.0, 566.0, 566.0, 566.0, 569.0, 567.0, 568.0, 567.0, 567.0, 568.0, 567.0, 567.0, 567.0, 567.0, 567.0, 566.0, 568.0, 566.0, 567.0, 567.0, 567.0, 567.0, 568.0, 566.0, 567.0, 567.0, 566.0, 567.0, 568.0, 566.0, 566.0, 566.0, 566.0, 567.0, 568.0, 567.0, 566.0, 567.0, 568.0, 567.0, 566.0, 567.0, 569.0, 569.0, 564.0, 565.0, 566.0, 567.0, 567.0, 567.0, 568.0, 567.0, 568.0, 567.0, 567.0, 567.0, 568.0, 567.0, 566.0, 566.0, 566.0, 565.0, 566.0, 566.0, 567.0, 566.0, 568.0, 568.0, 568.0, 568.0, 567.0, 567.0, 566.0, 565.0, 566.0, 566.0, 566.0, 566.0, 566.0, 566.0, 567.0, 566.0], 'WindowWidth': [1207.0, 1205.0, 1205.0, 1203.0, 1202.0, 1205.0, 1203.0, 1205.0, 1203.0, 1205.0, 1204.0, 1207.0, 1208.0, 1203.0, 1205.0, 1201.0, 1201.0, 1204.0, 1204.0, 1203.0, 1205.0, 1202.0, 1203.0, 1203.0, 1203.0, 1200.0, 1202.0, 1206.0, 1204.0, 1206.0, 1204.0, 1203.0, 1202.0, 1201.0, 1202.0, 1202.0, 1199.0, 1203.0, 1202.0, 1204.0, 1202.0, 1201.0, 1202.0, 1205.0, 1208.0, 1206.0, 1203.0, 1200.0, 1201.0, 1202.0, 1201.0, 1202.0, 1203.0, 1200.0, 1204.0, 1203.0, 1202.0, 1203.0, 1203.0, 1202.0, 1198.0, 1202.0, 1199.0, 1198.0, 1202.0, 1196.0, 1200.0, 1201.0, 1200.0, 1200.0, 1199.0, 1205.0, 1200.0, 1200.0, 1204.0, 1202.0, 1202.0, 1201.0, 1197.0, 1201.0, 1204.0, 1203.0, 1199.0, 1199.0, 1200.0, 1199.0, 1205.0, 1202.0, 1204.0, 1201.0, 1200.0, 1204.0, 1202.0, 1200.0, 1202.0, 1200.0, 1201.0, 1198.0, 1203.0, 1200.0, 1201.0, 1201.0, 1202.0, 1202.0, 1203.0, 1199.0, 1200.0, 1201.0, 1199.0, 1201.0, 1202.0, 1200.0, 1199.0, 1199.0, 1199.0, 1202.0, 1204.0, 1201.0, 1198.0, 1201.0, 1203.0, 1201.0, 1199.0, 1201.0, 1205.0, 1205.0, 1196.0, 1197.0, 1199.0, 1200.0, 1200.0, 1201.0, 1204.0, 1200.0, 1203.0, 1201.0, 1201.0, 1201.0, 1203.0, 1200.0, 1199.0, 1200.0, 1199.0, 1197.0, 1199.0, 1200.0, 1202.0, 1198.0, 1203.0, 1203.0, 1204.0, 1203.0, 1201.0, 1202.0, 1199.0, 1197.0, 1200.0, 1199.0, 1199.0, 1199.0, 1198.0, 1200.0, 1202.0, 1199.0]}, 'slices': {}}

aor0.003148414634146342
aqi0.008112899268292681
dummy_trs0
dvarsnstd13.518308177361964
dvarsstd1.1440742476073615
dvarsvstd0.9607068230061355
efc0.3962
fber51416.4805
fdmean0.07444966134599611
fdnum7
fdperc4.2682926829268295
fwhmavg2.190364840480127
fwhmx2.1311375
fwhmy2.4327325
fwhmz2.007224521440382
gcor0.0139894
gsrx-0.022732503712177277
gsry0.015019925311207771
sizet164
sizex64
sizey64
sizez32
snr3.8986988982726545
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.000000953674316
summarybgk41.8954
summarybgmad2.4137
summarybgmean18.5915
summarybgmedian3.0
summarybgn109606.0
summarybgp051.0
summarybgp9594.0
summarybgstdv47.3441
summaryfgk1.9166
summaryfgmad103.1946
summaryfgmean637.0936
summaryfgmedian680.0
summaryfgn21466.0
summaryfgp05221.0
summaryfgp95834.0
summaryfgstdv174.4131
tsnr85.26349076954648
Rating widget

  • Exclude
  • Poor
  • Acceptable
  • Excellent

Comments

Rater confidence

  • Doubtful
  • Confident
Download