Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS218/figures/sub-CTS218_task-restfixationnofeedback_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS218/figures/sub-CTS218_task-restfixationnofeedback_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS218/figures/sub-CTS218_task-restfixationnofeedback_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS218/figures/sub-CTS218_task-restfixationnofeedback_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS218/figures/sub-CTS218_task-restfixationnofeedback_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS218/figures/sub-CTS218_task-restfixationnofeedback_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS218/figures/sub-CTS218_task-restfixationnofeedback_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS218/figures/sub-CTS218_task-restfixationnofeedback_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS218/func/sub-CTS218_task-restfixationnofeedback_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum769d58ea3047fe9768ebc7ab46f16b87

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime13:01:2.005000
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.996929, -0.062634, 0.0470088, 0.0604511, 0.997087, 0.0465048]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest2
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.12745
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest2
SeriesNumber8
ShimSetting[-189, -19533, 7969, 269, 49, -564, 244, -70]
SliceThickness4
SliceTiming[1.255, 0, 1.335, 0.08, 1.4125, 0.1575, 1.49, 0.235, 1.57, 0.315, 1.6475, 0.3925, 1.725, 0.4725, 1.805, 0.55, 1.8825, 0.6275, 1.9625, 0.7075, 2.04, 0.785, 2.1175, 0.8625, 2.1975, 0.9425, 2.275, 1.02, 2.3525, 1.0975, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationnofeedback
TotalReadoutTime0.0371701
TxRefAmp335.725
dcmmetaaffine[[-3.987715482711792, 0.24180446565151215, 0.1991386115550995, 120.38082885742188], [0.25053614377975464, 3.988348960876465, 0.17408111691474915, -132.5615692138672], [0.18803516030311584, -0.18601933121681213, 3.9912455081939697, -43.6354866027832], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.019561524390243903
aqi0.03527917841463415
dummy_trs0
dvarsnstd22.459173840429454
dvarsstd1.1830174321472395
dvarsvstd1.006548710306748
efc0.4069
fber60723.1953
fdmean0.24505594145281848
fdnum67
fdperc40.853658536585364
fwhmavg2.127819166666667
fwhmx2.030775
fwhmy2.341115
fwhmz2.0115675
gcor0.0169023
gsrx-0.024773918092250824
gsry0.013696501962840557
sizet164
sizex64
sizey64
sizez32
snr4.776006380146693
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.0
summarybgk44.8704
summarybgmad2.1606
summarybgmean24.0889
summarybgmedian3.0
summarybgn108712.0
summarybgp051.0
summarybgp95132.0
summarybgstdv68.5662
summaryfgk3.0039
summaryfgmad120.1178
summaryfgmean800.725
summaryfgmedian825.0
summaryfgn22360.0
summaryfgp05427.0
summaryfgp951016.0
summaryfgstdv172.7346
tsnr40.02034425269812
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