Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS215/figures/sub-CTS215_task-restfixationadaptive_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS215/figures/sub-CTS215_task-restfixationadaptive_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS215/figures/sub-CTS215_task-restfixationadaptive_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS215/figures/sub-CTS215_task-restfixationadaptive_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS215/figures/sub-CTS215_task-restfixationadaptive_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS215/figures/sub-CTS215_task-restfixationadaptive_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS215/figures/sub-CTS215_task-restfixationadaptive_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS215/figures/sub-CTS215_task-restfixationadaptive_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS215/func/sub-CTS215_task-restfixationadaptive_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumdb6515e961d42d654c085fa3b84f31b4

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime13:31:43.250000
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.996142, 0.0190981, 0.0856549, -0.0197579, 0.999781, 0.00686144]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.125626
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber11
ShimSetting[-200, -19505, 7909, 196, -100, -513, 320, 91]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.41, 0.1575, 1.49, 0.235, 1.5675, 0.3125, 1.6475, 0.3925, 1.725, 0.47, 1.8025, 0.5475, 1.8825, 0.6275, 1.96, 0.705, 2.0375, 0.785, 2.1175, 0.8625, 2.195, 0.94, 2.275, 1.02, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationadaptive
TotalReadoutTime0.0371701
TxRefAmp324.939
dcmmetaaffine[[-3.9845681190490723, -0.07903160154819489, 0.3420203924179077, 132.48117065429688], [-0.07639239728450775, 3.999124050140381, 0.034109316766262054, -127.92643737792969], [0.3426195979118347, -0.027445759624242783, 3.9852046966552734, -61.23645782470703], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0018112269938650306
aqi0.004506400368098159
dummy_trs1
dvarsnstd13.786910169135808
dvarsstd1.306957643765432
dvarsvstd0.9931846865432095
efc0.4058
fber50575.0117
fdmean0.04227750403700543
fdnum3
fdperc1.8404907975460123
fwhmavg2.20124
fwhmx2.160055
fwhmy2.34428
fwhmz2.099385
gcor0.00864538
gsrx-0.024554109200835228
gsry0.008140684105455875
sizet163
sizex64
sizey64
sizez32
snr4.183362781670422
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.0
summarybgk37.2849
summarybgmad3.2108
summarybgmean23.9724
summarybgmedian4.0
summarybgn108989.0
summarybgp051.0
summarybgp95122.0
summarybgstdv64.0995
summaryfgk2.8168
summaryfgmad123.4835
summaryfgmean759.203
summaryfgmedian795.0
summaryfgn22083.0
summaryfgp05320.0
summaryfgp95980.0
summaryfgstdv190.0342
tsnr108.13263702392578
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