Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS215/figures/sub-CTS215_task-restbaseline_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS215/figures/sub-CTS215_task-restbaseline_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS215/figures/sub-CTS215_task-restbaseline_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS215/figures/sub-CTS215_task-restbaseline_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS215/figures/sub-CTS215_task-restbaseline_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS215/figures/sub-CTS215_task-restbaseline_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS215/figures/sub-CTS215_task-restbaseline_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS215/figures/sub-CTS215_task-restbaseline_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS215/func/sub-CTS215_task-restbaseline_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumdc9ecb53697d3f5c597f441e2cc5c1a5

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime12:48:40.502500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.996142, 0.0190981, 0.0856549, -0.0197579, 0.999781, 0.00686144]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.125626
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber5
ShimSetting[-200, -19505, 7909, 196, -100, -513, 320, 91]
SliceThickness4
SliceTiming[1.2525, 0, 1.3325, 0.0775, 1.41, 0.155, 1.49, 0.235, 1.5675, 0.3125, 1.645, 0.39, 1.725, 0.47, 1.8025, 0.5475, 1.88, 0.6275, 1.96, 0.705, 2.0375, 0.7825, 2.1175, 0.8625, 2.195, 0.94, 2.2725, 1.0175, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestbaseline
TotalReadoutTime0.0371701
TxRefAmp324.939
dcmmetaaffine[[-3.9845681190490723, -0.07903160154819489, 0.3420203924179077, 132.48117065429688], [-0.07639239728450775, 3.999124050140381, 0.034109316766262054, -127.92643737792969], [0.3426195979118347, -0.027445759624242783, 3.9852046966552734, -62.77845764160156], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'AcquisitionTime': ['124840.502500', '124843.015000', '124845.525000', '124848.035000', '124850.545000', '124853.055000', '124855.565000', '124858.075000', '124900.585000', '124903.095000', '124905.605000', '124908.115000', '124910.625000', '124913.135000', '124915.645000', '124918.155000', '124920.665000', '124923.175000', '124925.685000', '124928.195000', '124930.705000', '124933.215000', '124935.725000', '124938.235000', '124940.745000', '124943.255000', '124945.765000', '124948.275000', '124950.785000', '124953.295000', '124955.805000', '124958.315000', '125000.825000', '125003.335000', '125005.845000', '125008.355000', '125010.865000', '125013.375000', '125015.885000', '125018.395000', '125020.905000', '125023.415000', '125025.925000', '125028.435000', '125030.945000', '125033.455000', '125035.965000', '125038.475000', '125040.985000', '125043.495000', '125046.005000', '125048.515000', '125051.025000', '125053.535000', '125056.045000', '125058.555000', '125101.065000', '125103.575000', '125106.085000', '125108.595000', '125111.105000', '125113.615000', '125116.125000', '125118.637500', '125121.147500', '125123.657500', '125126.167500', '125128.677500', '125131.187500', '125133.697500', '125136.207500', '125138.717500', '125141.227500', '125143.737500', '125146.247500', '125148.757500', '125151.267500', '125153.777500', '125156.287500', '125158.797500', '125201.307500', '125203.817500', '125206.327500', '125208.837500', '125211.347500', '125213.857500', '125216.367500', '125218.877500', '125221.387500', '125223.897500', '125226.407500', '125228.917500', '125231.427500', '125233.937500', '125236.447500', '125238.957500', '125241.467500', '125243.977500', '125246.487500', '125248.997500', '125251.507500', '125254.017500', '125256.527500', '125259.037500', '125301.547500', '125304.057500', '125306.567500', '125309.077500', '125311.587500', '125314.097500', '125316.607500', '125319.117500', '125321.627500', '125324.137500', '125326.647500', '125329.157500', '125331.667500', '125334.177500', '125336.687500', '125339.197500', '125341.707500', '125344.217500', '125346.727500', '125349.237500', '125351.747500', '125354.260000', '125356.770000', '125359.280000', '125401.790000', '125404.300000', '125406.810000', '125409.320000', '125411.830000', '125414.340000', '125416.850000', '125419.360000', '125421.870000', '125424.380000', '125426.890000', '125429.400000', '125431.910000', '125434.420000', '125436.930000', '125439.440000', '125441.950000', '125444.460000', '125446.970000', '125449.480000', '125451.990000', '125454.500000', '125457.010000', '125459.520000', '125502.030000', '125504.540000', '125507.050000', '125509.560000', '125512.070000', '125514.580000', '125517.090000', '125519.600000', '125522.110000', '125524.620000', '125527.130000', '125529.640000'], 'ContentTime': ['124842.375000', '124844.859000', '124847.359000', '124849.859000', '124852.359000', '124854.859000', '124857.359000', '124859.859000', '124902.359000', '124904.859000', '124907.359000', '124909.859000', '124912.359000', '124914.859000', '124917.359000', '124919.859000', '124922.359000', '124924.859000', '124927.359000', '124929.859000', '124932.359000', '124934.859000', '124937.359000', '124939.859000', '124942.359000', '124944.859000', '124947.359000', '124949.859000', '124952.359000', '124954.859000', '124957.359000', '124959.859000', '125002.359000', '125004.859000', '125007.359000', '125009.859000', '125012.359000', '125014.859000', '125017.359000', '125019.859000', '125022.359000', '125024.859000', '125027.359000', '125029.859000', '125032.359000', '125034.859000', '125037.359000', '125039.859000', '125042.359000', '125044.859000', '125047.359000', '125049.859000', '125052.359000', '125054.859000', '125057.359000', '125059.859000', '125102.359000', '125104.859000', '125107.359000', '125109.859000', '125112.359000', '125114.859000', '125117.359000', '125119.859000', '125122.359000', '125124.859000', '125127.359000', '125129.859000', '125132.359000', '125134.859000', '125137.359000', '125139.859000', '125142.359000', '125144.859000', '125147.359000', '125149.859000', '125152.359000', '125154.859000', '125157.359000', '125159.859000', '125202.359000', '125204.859000', '125207.359000', '125209.859000', '125212.359000', '125214.859000', '125217.359000', '125219.859000', '125222.359000', '125224.859000', '125227.359000', '125229.859000', '125232.359000', '125234.859000', '125237.359000', '125239.859000', '125242.359000', '125244.859000', '125247.359000', '125249.859000', '125252.359000', '125254.859000', '125257.359000', '125259.859000', '125302.359000', '125304.859000', '125307.359000', '125309.859000', '125312.359000', '125314.859000', '125317.359000', '125319.859000', '125322.359000', '125324.859000', '125327.359000', '125329.859000', '125332.359000', '125334.859000', '125337.359000', '125339.859000', '125342.359000', '125344.859000', '125347.359000', '125349.859000', '125352.359000', '125354.859000', '125357.359000', '125359.859000', '125402.359000', '125404.859000', '125407.359000', '125409.859000', '125412.359000', '125414.859000', '125417.359000', '125419.859000', '125422.359000', '125424.859000', '125427.359000', '125429.859000', '125432.359000', '125434.859000', '125437.359000', '125439.859000', '125442.359000', '125444.859000', '125447.359000', '125449.859000', '125452.359000', '125454.859000', '125457.359000', '125459.859000', '125502.359000', '125504.859000', '125507.359000', '125509.859000', '125512.359000', '125514.859000', '125517.359000', '125519.859000', '125522.359000', '125524.859000', '125527.359000', '125529.765000'], 'InstanceNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164], 'WindowCenter': [633.0, 631.0, 632.0, 630.0, 629.0, 631.0, 630.0, 632.0, 630.0, 630.0, 630.0, 630.0, 632.0, 630.0, 632.0, 630.0, 631.0, 629.0, 630.0, 630.0, 631.0, 632.0, 632.0, 630.0, 629.0, 630.0, 631.0, 631.0, 631.0, 634.0, 630.0, 630.0, 631.0, 631.0, 630.0, 631.0, 633.0, 631.0, 634.0, 631.0, 631.0, 632.0, 631.0, 631.0, 631.0, 631.0, 630.0, 630.0, 630.0, 630.0, 629.0, 629.0, 630.0, 632.0, 630.0, 629.0, 629.0, 630.0, 628.0, 631.0, 630.0, 631.0, 632.0, 631.0, 630.0, 630.0, 629.0, 629.0, 630.0, 630.0, 630.0, 631.0, 630.0, 631.0, 630.0, 631.0, 630.0, 629.0, 630.0, 629.0, 630.0, 630.0, 631.0, 630.0, 629.0, 630.0, 633.0, 630.0, 631.0, 630.0, 630.0, 630.0, 631.0, 632.0, 630.0, 630.0, 629.0, 631.0, 630.0, 633.0, 630.0, 630.0, 630.0, 631.0, 629.0, 628.0, 629.0, 630.0, 630.0, 629.0, 630.0, 630.0, 631.0, 628.0, 632.0, 632.0, 630.0, 631.0, 631.0, 631.0, 629.0, 631.0, 629.0, 628.0, 629.0, 630.0, 629.0, 630.0, 631.0, 630.0, 633.0, 630.0, 629.0, 632.0, 629.0, 630.0, 630.0, 631.0, 633.0, 631.0, 630.0, 629.0, 629.0, 629.0, 628.0, 629.0, 630.0, 630.0, 629.0, 630.0, 631.0, 630.0, 629.0, 631.0, 628.0, 630.0, 629.0, 628.0, 631.0, 629.0, 630.0, 629.0, 630.0, 630.0], 'WindowWidth': [1366.0, 1362.0, 1362.0, 1358.0, 1356.0, 1360.0, 1359.0, 1364.0, 1360.0, 1360.0, 1359.0, 1358.0, 1362.0, 1359.0, 1362.0, 1358.0, 1360.0, 1356.0, 1357.0, 1358.0, 1360.0, 1363.0, 1363.0, 1358.0, 1357.0, 1359.0, 1361.0, 1361.0, 1361.0, 1366.0, 1359.0, 1358.0, 1361.0, 1362.0, 1359.0, 1361.0, 1364.0, 1360.0, 1366.0, 1362.0, 1360.0, 1362.0, 1361.0, 1361.0, 1360.0, 1360.0, 1358.0, 1359.0, 1357.0, 1358.0, 1357.0, 1356.0, 1358.0, 1362.0, 1359.0, 1356.0, 1357.0, 1358.0, 1354.0, 1359.0, 1359.0, 1360.0, 1362.0, 1360.0, 1358.0, 1357.0, 1355.0, 1355.0, 1359.0, 1358.0, 1358.0, 1359.0, 1358.0, 1361.0, 1359.0, 1360.0, 1358.0, 1356.0, 1358.0, 1357.0, 1357.0, 1359.0, 1360.0, 1358.0, 1357.0, 1359.0, 1364.0, 1357.0, 1360.0, 1357.0, 1359.0, 1357.0, 1359.0, 1362.0, 1357.0, 1358.0, 1356.0, 1360.0, 1358.0, 1364.0, 1357.0, 1358.0, 1359.0, 1359.0, 1354.0, 1354.0, 1355.0, 1358.0, 1358.0, 1357.0, 1359.0, 1358.0, 1359.0, 1353.0, 1361.0, 1363.0, 1357.0, 1360.0, 1359.0, 1360.0, 1356.0, 1359.0, 1355.0, 1353.0, 1355.0, 1357.0, 1357.0, 1359.0, 1360.0, 1358.0, 1364.0, 1357.0, 1357.0, 1362.0, 1357.0, 1358.0, 1357.0, 1360.0, 1363.0, 1360.0, 1357.0, 1356.0, 1356.0, 1355.0, 1355.0, 1355.0, 1358.0, 1357.0, 1355.0, 1357.0, 1359.0, 1359.0, 1357.0, 1359.0, 1355.0, 1358.0, 1355.0, 1353.0, 1360.0, 1355.0, 1357.0, 1355.0, 1357.0, 1358.0]}, 'slices': {}}

aor0.0011092638036809817
aqi0.005383504233128834
dummy_trs1
dvarsnstd14.163443353395058
dvarsstd1.244392134012345
dvarsvstd0.9411401508641971
efc0.4047
fber51253.5547
fdmean0.03955803052339683
fdnum0
fdperc0.0
fwhmavg2.231291666666667
fwhmx2.209065
fwhmy2.38683
fwhmz2.09798
gcor0.0132079
gsrx-0.023750485852360725
gsry0.009501220658421516
sizet163
sizex64
sizey64
sizez32
snr4.135375284874919
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.0
summarybgk42.616
summarybgmad3.2199
summarybgmean23.1646
summarybgmedian4.0
summarybgn108856.0
summarybgp051.0
summarybgp95116.0
summarybgstdv62.882
summaryfgk2.5334
summaryfgmad124.4158
summaryfgmean757.2878
summaryfgmedian794.0
summaryfgn22216.0
summaryfgp05310.0
summaryfgp95981.0
summaryfgstdv191.9976
tsnr96.95177895133384
Rating widget

  • Exclude
  • Poor
  • Acceptable
  • Excellent

Comments

Rater confidence

  • Doubtful
  • Confident
Download