Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS213/figures/sub-CTS213_task-restbaseline_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS213/figures/sub-CTS213_task-restbaseline_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS213/figures/sub-CTS213_task-restbaseline_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS213/figures/sub-CTS213_task-restbaseline_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS213/figures/sub-CTS213_task-restbaseline_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS213/figures/sub-CTS213_task-restbaseline_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS213/figures/sub-CTS213_task-restbaseline_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS213/figures/sub-CTS213_task-restbaseline_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS213/func/sub-CTS213_task-restbaseline_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumb7a6f7f3b37174593b2d0b0c18c7134e

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime18:08:3.137500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.997695, -0.060719, 0.0302932, 0.063934, 0.990732, -0.119843]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.207246
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber6
ShimSetting[-204, -19532, 8022, 129, 150, -454, -4, -77]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.08, 1.4125, 0.1575, 1.49, 0.235, 1.57, 0.315, 1.6475, 0.3925, 1.725, 0.47, 1.805, 0.55, 1.8825, 0.6275, 1.96, 0.705, 2.04, 0.785, 2.1175, 0.8625, 2.1975, 0.9425, 2.275, 1.02, 2.3525, 1.0975, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestbaseline
TotalReadoutTime0.0371701
TxRefAmp322.616
dcmmetaaffine[[-3.9907803535461426, 0.25573617219924927, 0.0909426361322403, 123.0160903930664], [0.24287596344947815, 3.962928295135498, -0.486014723777771, -127.98190307617188], [0.12117267400026321, 0.4793725907802582, 3.9693222045898438, -75.53914642333984], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.00636963190184049
aqi0.019777375889570552
dummy_trs1
dvarsnstd22.066621615679015
dvarsstd1.3149336548148147
dvarsvstd1.029210438888888
efc0.4095
fber43716.5273
fdmean0.14796255333488717
fdnum31
fdperc19.01840490797546
fwhmavg2.2625050000000004
fwhmx2.197835
fwhmy2.4608
fwhmz2.12888
gcor0.00985872
gsrx-0.02698979526758194
gsry0.019046206027269363
sizet163
sizex64
sizey64
sizez32
snr4.1149932584857165
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.0
summarybgk39.0668
summarybgmad2.6923
summarybgmean18.0075
summarybgmedian3.0
summarybgn109451.0
summarybgp051.0
summarybgp9588.0
summarybgstdv46.5058
summaryfgk2.6287
summaryfgmad82.3708
summaryfgmean505.1406
summaryfgmedian528.0
summaryfgn21621.0
summaryfgp05205.0
summaryfgp95655.0
summaryfgstdv128.3083
tsnr48.64572183042765
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