Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS211/figures/sub-CTS211_task-restfixationadaptive_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS211/figures/sub-CTS211_task-restfixationadaptive_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS211/figures/sub-CTS211_task-restfixationadaptive_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS211/figures/sub-CTS211_task-restfixationadaptive_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS211/figures/sub-CTS211_task-restfixationadaptive_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS211/figures/sub-CTS211_task-restfixationadaptive_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS211/figures/sub-CTS211_task-restfixationadaptive_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS211/figures/sub-CTS211_task-restfixationadaptive_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS211/func/sub-CTS211_task-restfixationadaptive_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum5fd23f9e9ca2b3cf43e3b3d9fee25928

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime14:35:38.757500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.999416, -0.0341636, 0.0010837, 0.0317575, 0.939817, 0.340198]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_ad_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.139451
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_ad_rest
SeriesNumber9
ShimSetting[-231, -19678, 7947, 183, 42, -480, 420, 123]
SliceThickness4
SliceTiming[1.255, 0, 1.335, 0.08, 1.4125, 0.1575, 1.49, 0.2375, 1.57, 0.315, 1.6475, 0.3925, 1.7275, 0.4725, 1.805, 0.55, 1.8825, 0.6275, 1.9625, 0.7075, 2.04, 0.785, 2.1175, 0.8625, 2.1975, 0.9425, 2.275, 1.02, 2.3525, 1.1, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationadaptive
TotalReadoutTime0.0371701
TxRefAmp349.43
dcmmetaaffine[[-3.9976625442504883, 0.12702980637550354, 0.05056348815560341, 130.59381103515625], [0.13665448129177094, 3.759269952774048, 1.3598582744598389, -142.88766479492188], [0.004334815312176943, -1.3607913255691528, 3.7614126205444336, 27.599658966064453], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.11717323170731705
aqi0.1125799163414634
dummy_trs0
dvarsnstd33.16874685441719
dvarsstd1.4164211345398778
dvarsvstd1.8772417425766887
efc0.4089
fber53022.7578
fdmean0.4288334139446946
fdnum52
fdperc31.70731707317073
fwhmavg2.5471376004298647
fwhmx2.3467375
fwhmy2.767275
fwhmz2.5274003012895943
gcor0.0528217
gsrx-0.026228319853544235
gsry0.013215464539825916
sizet164
sizex64
sizey64
sizez32
snr4.698068063602666
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.999999523162842
summarybgk42.8067
summarybgmad2.3414
summarybgmean22.2208
summarybgmedian3.0
summarybgn108472.0
summarybgp051.0
summarybgp95116.0
summarybgstdv63.5143
summaryfgk2.5104
summaryfgmad114.3683
summaryfgmean730.1523
summaryfgmedian755.0
summaryfgn22600.0
summaryfgp05388.5
summaryfgp95934.0
summaryfgstdv160.7008
tsnr18.095581939676777
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