Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS210/figures/sub-CTS210_task-restfixationfixed_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS210/figures/sub-CTS210_task-restfixationfixed_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS210/figures/sub-CTS210_task-restfixationfixed_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS210/figures/sub-CTS210_task-restfixationfixed_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS210/figures/sub-CTS210_task-restfixationfixed_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS210/figures/sub-CTS210_task-restfixationfixed_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS210/figures/sub-CTS210_task-restfixationfixed_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS210/figures/sub-CTS210_task-restfixationfixed_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS210/func/sub-CTS210_task-restfixationfixed_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5suma10c2e95ffe571d247c756bdfb37d338

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime08:25:42.210000
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.998615, 0.00901956, -0.0518278, 0.00462592, 0.96632, 0.2573]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_feedback_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.136964
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_feedback_rest
SeriesNumber9
ShimSetting[-285, -19617, 7988, 246, -63, -445, 266, 128]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.41, 0.155, 1.49, 0.235, 1.5675, 0.3125, 1.645, 0.3925, 1.725, 0.47, 1.8025, 0.5475, 1.8825, 0.6275, 1.96, 0.705, 2.0375, 0.7825, 2.1175, 0.8625, 2.195, 0.94, 2.2725, 1.0175, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationfixed
TotalReadoutTime0.0371701
TxRefAmp341.427
dcmmetaaffine[[-3.9944612979888916, 0.018503684550523758, -0.2096118927001953, 137.54656982421875], [-0.036078255623579025, 3.865281820297241, 1.028734564781189, -143.70362854003906], [-0.20731116831302643, -1.0292010307312012, 3.8597612380981445, 11.478185653686523], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.05461853658536586
aqi0.10212135975609757
dummy_trs0
dvarsnstd40.25897655601227
dvarsstd1.1766730855214727
dvarsvstd1.203122288588957
efc0.3814
fber62160.5898
fdmean0.7153886668505748
fdnum100
fdperc60.97560975609756
fwhmavg2.385868559879976
fwhmx2.2419875
fwhmy2.635125
fwhmz2.280493179639929
gcor0.0534294
gsrx-0.027439260855317116
gsry0.006918339058756828
sizet164
sizex64
sizey64
sizez32
snr4.570400602775003
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.9999988079071045
summarybgk29.4097
summarybgmad2.5042
summarybgmean18.8915
summarybgmedian3.0
summarybgn111702.0
summarybgp051.0
summarybgp95100.0
summarybgstdv51.395
summaryfgk2.5787
summaryfgmad93.6209
summaryfgmean662.8826
summaryfgmedian698.0
summaryfgn19370.0
summaryfgp05305.0
summaryfgp95834.0
summaryfgstdv152.7179
tsnr20.67348803090863
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