Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS210/figures/sub-CTS210_task-restbaseline_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS210/figures/sub-CTS210_task-restbaseline_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS210/figures/sub-CTS210_task-restbaseline_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS210/figures/sub-CTS210_task-restbaseline_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS210/figures/sub-CTS210_task-restbaseline_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS210/figures/sub-CTS210_task-restbaseline_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS210/figures/sub-CTS210_task-restbaseline_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS210/figures/sub-CTS210_task-restbaseline_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS210/func/sub-CTS210_task-restbaseline_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumead98c9fd313ac1f0be08b3406f24622

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime08:17:24.587500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.998615, 0.00901956, -0.0518278, 0.00462592, 0.96632, 0.2573]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.136964
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber8
ShimSetting[-285, -19617, 7988, 246, -63, -445, 266, 128]
SliceThickness4
SliceTiming[1.255, 0, 1.335, 0.08, 1.4125, 0.1575, 1.49, 0.235, 1.57, 0.315, 1.6475, 0.3925, 1.725, 0.4725, 1.805, 0.55, 1.8825, 0.6275, 1.9625, 0.7075, 2.04, 0.785, 2.1175, 0.8625, 2.1975, 0.9425, 2.275, 1.02, 2.3525, 1.0975, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestbaseline
TotalReadoutTime0.0371701
TxRefAmp341.427
dcmmetaaffine[[-3.9944612979888916, 0.018503684550523758, -0.2096118927001953, 137.54656982421875], [-0.036078255623579025, 3.865281820297241, 1.028734564781189, -143.70362854003906], [-0.20731116831302643, -1.0292010307312012, 3.8597612380981445, 11.478185653686523], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.05969048780487805
aqi0.2111712585365854
dummy_trs0
dvarsnstd86.10935922049084
dvarsstd1.1401906406134967
dvarsvstd1.3287044431288346
efc0.3834
fber58085.0664
fdmean2.4408407992195027
fdnum145
fdperc88.41463414634147
fwhmavg2.6762594169764466
fwhmx2.4713025
fwhmy3.037775
fwhmz2.5197007509293408
gcor0.0663504
gsrx-0.030595099553465843
gsry0.0056875902228057384
sizet164
sizex64
sizey64
sizez32
snr5.047078296530335
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.9999988079071045
summarybgk22.7237
summarybgmad2.5946
summarybgmean20.8615
summarybgmedian3.0
summarybgn112411.0
summarybgp051.0
summarybgp95124.0
summarybgstdv54.6611
summaryfgk2.5934
summaryfgmad86.9401
summaryfgmean664.6953
summaryfgmedian697.0
summaryfgn18661.0
summaryfgp05351.0
summaryfgp95821.0
summaryfgstdv138.096
tsnr11.431700544781052
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