Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS209/figures/sub-CTS209_task-restbaseline_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS209/figures/sub-CTS209_task-restbaseline_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS209/figures/sub-CTS209_task-restbaseline_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS209/figures/sub-CTS209_task-restbaseline_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS209/figures/sub-CTS209_task-restbaseline_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS209/figures/sub-CTS209_task-restbaseline_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS209/figures/sub-CTS209_task-restbaseline_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS209/figures/sub-CTS209_task-restbaseline_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS209/func/sub-CTS209_task-restbaseline_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumeb40fec9fc46024c4e24a8314e3d0848

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime09:29:29.380000
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.994727, -0.0898032, -0.0495321, 0.0932865, 0.992946, 0.0731822]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.134691
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber5
ShimSetting[-243, -19530, 8058, 363, 207, -450, 436, 3]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.08, 1.4125, 0.1575, 1.49, 0.235, 1.57, 0.315, 1.6475, 0.3925, 1.725, 0.47, 1.805, 0.55, 1.8825, 0.6275, 1.96, 0.7075, 2.04, 0.785, 2.1175, 0.8625, 2.1975, 0.9425, 2.275, 1.02, 2.3525, 1.0975, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestbaseline
TotalReadoutTime0.0371701
TxRefAmp352.168
dcmmetaaffine[[-3.9789083003997803, 0.37314608693122864, -0.17044295370578766, 124.97509002685547], [0.35921287536621094, 3.9717843532562256, 0.30966800451278687, -148.0855712890625], [-0.19812849164009094, -0.2927287817001343, 3.984351873397827, -17.098648071289062], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.16554926380368098
aqi0.10806315680981593
dummy_trs1
dvarsnstd25.63715227135802
dvarsstd0.7109281539506175
dvarsvstd0.9987145075925918
efc0.4243
fber55573.168
fdmean0.5457087107496614
fdnum23
fdperc14.110429447852761
fwhmavg2.1936082481540344
fwhmx2.0134775
fwhmy2.42374
fwhmz2.1436072444621033
gcor0.0316925
gsrx-0.02210162580013275
gsry0.012405156157910824
sizet163
sizex64
sizey64
sizez32
snr5.2063007291357986
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.000000476837158
summarybgk38.4269
summarybgmad3.2381
summarybgmean24.2904
summarybgmedian4.0
summarybgn106488.0
summarybgp051.0
summarybgp95124.0
summarybgstdv69.9032
summaryfgk2.8554
summaryfgmad118.308
summaryfgmean814.3845
summaryfgmedian836.0
summaryfgn24584.0
summaryfgp05478.0
summaryfgp951021.0
summaryfgstdv160.5714
tsnr20.92760166618973
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