Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS208/figures/sub-CTS208_task-restfixationadaptive_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS208/figures/sub-CTS208_task-restfixationadaptive_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS208/figures/sub-CTS208_task-restfixationadaptive_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS208/figures/sub-CTS208_task-restfixationadaptive_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS208/figures/sub-CTS208_task-restfixationadaptive_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS208/figures/sub-CTS208_task-restfixationadaptive_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS208/figures/sub-CTS208_task-restfixationadaptive_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS208/figures/sub-CTS208_task-restfixationadaptive_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS208/func/sub-CTS208_task-restfixationadaptive_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum0607b3b4459bf9ce6289704fa349b292

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime14:03:47.095000
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.99676, -0.000540161, -0.0804348, 0.0113085, 0.990987, 0.133482]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_ad_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.14361
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_ad_rest
SeriesNumber8
ShimSetting[-247, -19573, 8096, 439, 162, -14, 187, 18]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.41, 0.155, 1.49, 0.235, 1.5675, 0.3125, 1.645, 0.3925, 1.725, 0.47, 1.8025, 0.5475, 1.8825, 0.6275, 1.96, 0.705, 2.0375, 0.7825, 2.1175, 0.8625, 2.195, 0.94, 2.2725, 1.02, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationadaptive
TotalReadoutTime0.0371701
TxRefAmp353.169
dcmmetaaffine[[-3.9870388507843018, 0.04523400589823723, -0.3185510039329529, 131.1153564453125], [0.0021606453228741884, 3.963947057723999, 0.5358344316482544, -136.75184631347656], [-0.3217393457889557, -0.5339261889457703, 3.95112681388855, 3.1323585510253906], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.03946926829268293
aqi0.3572382073170732
dummy_trs0
dvarsnstd60.84395571263804
dvarsstd0.7218705879141104
dvarsvstd0.8685908890184045
efc0.4233
fber33881.7891
fdmean2.223822000540374
fdnum117
fdperc71.34146341463415
fwhmavg3.029133450802181
fwhmx2.7985
fwhmy3.3327
fwhmz2.956200352406544
gcor0.11744
gsrx-0.05957985669374466
gsry0.03174072504043579
sizet164
sizex64
sizey64
sizez32
snr7.357879499018163
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.999999523162842
summarybgk10.931
summarybgmad3.8602
summarybgmean39.757
summarybgmedian4.0
summarybgn112987.0
summarybgp051.0
summarybgp95291.0
summarybgstdv97.4449
summaryfgk1.5489
summaryfgmad78.804
summaryfgmean688.0534
summaryfgmedian705.0
summaryfgn18085.0
summaryfgp05502.0
summaryfgp95818.0
summaryfgstdv95.813
tsnr9.58149803802371
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