Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS204/figures/sub-CTS204_task-restbaseline_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS204/figures/sub-CTS204_task-restbaseline_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS204/figures/sub-CTS204_task-restbaseline_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS204/figures/sub-CTS204_task-restbaseline_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS204/figures/sub-CTS204_task-restbaseline_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS204/figures/sub-CTS204_task-restbaseline_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS204/figures/sub-CTS204_task-restbaseline_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS204/figures/sub-CTS204_task-restbaseline_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS204/func/sub-CTS204_task-restbaseline_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum7572ef88b6c994a4fcb9af7e77d97f58

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime16:00:12.022500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.996562, 0.0425437, 0.071097, -0.0506399, 0.991927, 0.116258]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.121041
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber5
ShimSetting[-214, -19555, 7923, -35, -125, -869, 348, -104]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.41, 0.1575, 1.49, 0.235, 1.5675, 0.3125, 1.6475, 0.3925, 1.725, 0.47, 1.8025, 0.5475, 1.8825, 0.6275, 1.96, 0.705, 2.0375, 0.785, 2.1175, 0.8625, 2.195, 0.94, 2.275, 1.02, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestbaseline
TotalReadoutTime0.0371701
TxRefAmp343.087
dcmmetaaffine[[-3.9862468242645264, -0.20255963504314423, 0.2623080611228943, 142.04489135742188], [-0.17017464339733124, 3.9677090644836426, 0.47783318161964417, -114.61013793945312], [0.2843880355358124, -0.46503084897994995, 3.9626834392547607, -35.24382781982422], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0008151851851851853
aqi0.01753794814814815
dummy_trs2
dvarsnstd15.888087894720494
dvarsstd1.0451654065838503
dvarsvstd0.8837844917391297
efc0.375
fber64109.7617
fdmean0.10629785182125355
fdnum3
fdperc1.8518518518518519
fwhmavg2.0899668644719416
fwhmx1.99984
fwhmy2.2788875
fwhmz1.9911730934158247
gcor0.014789
gsrx-0.026665760204195976
gsry0.008778588846325874
sizet162
sizex64
sizey64
sizez32
snr4.717988326854789
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.9999988079071045
summarybgk70.1967
summarybgmad2.0226
summarybgmean21.9017
summarybgmedian3.0
summarybgn112334.0
summarybgp051.0
summarybgp95112.0
summarybgstdv64.0971
summaryfgk3.4647
summaryfgmad106.7794
summaryfgmean787.0385
summaryfgmedian821.0
summaryfgn18738.0
summaryfgp05387.0
summaryfgp95984.0
summaryfgstdv174.0102
tsnr67.76242790836841
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