Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS202/figures/sub-CTS202_task-restfixationadaptive_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS202/figures/sub-CTS202_task-restfixationadaptive_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS202/figures/sub-CTS202_task-restfixationadaptive_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS202/figures/sub-CTS202_task-restfixationadaptive_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS202/figures/sub-CTS202_task-restfixationadaptive_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS202/figures/sub-CTS202_task-restfixationadaptive_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS202/figures/sub-CTS202_task-restfixationadaptive_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS202/figures/sub-CTS202_task-restfixationadaptive_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS202/func/sub-CTS202_task-restfixationadaptive_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum4c3bcae83f25ba63f3447c83d13a2478

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime17:09:46.497500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.98811, -0.136615, 0.0705323, 0.121674, 0.975279, 0.184462]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_adaptive_feedback_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.162901
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_adaptive_feedback_rest
SeriesNumber9
ShimSetting[-188, -19713, 8012, 403, 38, -813, 507, 175]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.4125, 0.1575, 1.49, 0.235, 1.5675, 0.315, 1.6475, 0.3925, 1.725, 0.47, 1.805, 0.55, 1.8825, 0.6275, 1.96, 0.705, 2.04, 0.785, 2.1175, 0.8625, 2.195, 0.94, 2.275, 1.02, 2.3525, 1.0975, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationadaptive
TotalReadoutTime0.0371701
TxRefAmp327.701
dcmmetaaffine[[-3.9524402618408203, 0.48669642210006714, 0.37595611810684204, 106.07947540283203], [0.5464608669281006, 3.901115894317627, 0.6947482228279114, -157.6194610595703], [0.2821291387081146, -0.7378488183021545, 3.9212231636047363, -2.2691659927368164], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.003993719512195122
aqi0.016236340609756098
dummy_trs0
dvarsnstd21.079715453558276
dvarsstd1.1759773153374233
dvarsvstd0.9429226393251535
efc0.4159
fber48709.1445
fdmean0.19763010183442065
fdnum63
fdperc38.41463414634146
fwhmavg2.001578110299091
fwhmx1.9130875
fwhmy2.2207
fwhmz1.8709468308972725
gcor0.0156203
gsrx-0.022187963128089905
gsry0.008285081014037132
sizet164
sizex64
sizey64
sizez32
snr4.774265857497276
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.000001430511475
summarybgk56.2893
summarybgmad2.5494
summarybgmean20.5392
summarybgmedian3.0
summarybgn107349.0
summarybgp051.0
summarybgp9592.0
summarybgstdv59.9912
summaryfgk3.355
summaryfgmad105.7349
summaryfgmean699.8871
summaryfgmedian721.0
summaryfgn23723.0
summaryfgp05373.0
summaryfgp95885.0
summaryfgstdv151.0148
tsnr61.78901999723166
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