Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS202/figures/sub-CTS202_task-restbaseline_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS202/figures/sub-CTS202_task-restbaseline_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS202/figures/sub-CTS202_task-restbaseline_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS202/figures/sub-CTS202_task-restbaseline_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS202/figures/sub-CTS202_task-restbaseline_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS202/figures/sub-CTS202_task-restbaseline_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS202/figures/sub-CTS202_task-restbaseline_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS202/figures/sub-CTS202_task-restbaseline_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS202/func/sub-CTS202_task-restbaseline_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum429f907c47103e28b4eb6c005ca4f49f

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime16:33:23.962500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.98811, -0.136615, 0.0705323, 0.121674, 0.975279, 0.184462]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.162901
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber5
ShimSetting[-188, -19713, 8012, 403, 38, -813, 507, 175]
SliceThickness4
SliceTiming[1.255, 0, 1.3325, 0.0775, 1.41, 0.1575, 1.49, 0.235, 1.5675, 0.3125, 1.6475, 0.3925, 1.725, 0.47, 1.8025, 0.5475, 1.8825, 0.6275, 1.96, 0.705, 2.0375, 0.785, 2.1175, 0.8625, 2.195, 0.94, 2.275, 1.02, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestbaseline
TotalReadoutTime0.0371701
TxRefAmp327.701
dcmmetaaffine[[-3.9524402618408203, 0.48669642210006714, 0.37595611810684204, 106.07947540283203], [0.5464608669281006, 3.901115894317627, 0.6947482228279114, -157.6194610595703], [0.2821291387081146, -0.7378488183021545, 3.9212231636047363, -2.2691659927368164], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.018231840490797544
aqi0.034723134355828224
dummy_trs1
dvarsnstd28.63481520419754
dvarsstd1.3233316043209875
dvarsvstd1.1215285853086423
efc0.4153
fber49028.5664
fdmean0.30462349029374614
fdnum106
fdperc65.03067484662577
fwhmavg2.117358933351521
fwhmx2.0484775
fwhmy2.34641
fwhmz1.9571893000545622
gcor0.0222378
gsrx-0.021324679255485535
gsry0.008513059467077255
sizet163
sizex64
sizey64
sizez32
snr4.719625312800428
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.000001430511475
summarybgk61.1257
summarybgmad2.5377
summarybgmean19.766
summarybgmedian3.0
summarybgn107229.0
summarybgp051.0
summarybgp9587.0
summarybgstdv58.1965
summaryfgk3.2256
summaryfgmad104.8281
summaryfgmean692.0316
summaryfgmedian715.0
summaryfgn23843.0
summaryfgp05359.0
summaryfgp95876.0
summaryfgstdv151.4919
tsnr42.57387315505184
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