Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS201/figures/sub-CTS201_task-restfixationfixed_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS201/figures/sub-CTS201_task-restfixationfixed_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS201/figures/sub-CTS201_task-restfixationfixed_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS201/figures/sub-CTS201_task-restfixationfixed_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS201/figures/sub-CTS201_task-restfixationfixed_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS201/figures/sub-CTS201_task-restfixationfixed_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS201/figures/sub-CTS201_task-restfixationfixed_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS201/figures/sub-CTS201_task-restfixationfixed_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS201/func/sub-CTS201_task-restfixationfixed_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum7a52dd4177ceb1980b2fb1f8186a4088

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime14:10:54.510000
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.994855, 0.0319663, -0.0961295, -0.020666, 0.992996, 0.116329]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_nonad_rest
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.129669
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_nonad_rest
SeriesNumber12
ShimSetting[-322, -19542, 7963, 277, -42, -397, 482, 138]
SliceThickness4
SliceTiming[1.255, 0, 1.335, 0.08, 1.4125, 0.1575, 1.49, 0.2375, 1.57, 0.315, 1.6475, 0.3925, 1.7275, 0.4725, 1.805, 0.55, 1.8825, 0.6275, 1.9625, 0.7075, 2.04, 0.785, 2.1175, 0.8625, 2.1975, 0.9425, 2.275, 1.02, 2.3525, 1.1, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestfixationfixed
TotalReadoutTime0.0371701
TxRefAmp348.397
dcmmetaaffine[[-3.979421615600586, -0.08266405016183853, -0.39669910073280334, 130.16146850585938], [-0.12786512076854706, 3.971982717514038, 0.4549770653247833, -136.68231201171875], [-0.38451793789863586, -0.46531742811203003, 3.954190731048584, -14.598855972290039], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.01097
aqi0.02212851294478527
dummy_trs1
dvarsnstd21.65320787895062
dvarsstd1.1751319219135805
dvarsvstd0.9967394513580248
efc0.3976
fber65118.5
fdmean0.2652445706941109
fdnum86
fdperc52.760736196319016
fwhmavg2.1510083728928886
fwhmx2.08757
fwhmy2.3743575
fwhmz1.9910976186786662
gcor0.0212195
gsrx-0.02839415706694126
gsry0.01072840578854084
sizet163
sizex64
sizey64
sizez32
snr5.191131679329777
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz3.999999761581421
summarybgk42.1502
summarybgmad2.2466
summarybgmean27.0432
summarybgmedian3.0
summarybgn110360.0
summarybgp051.0
summarybgp95131.0
summarybgstdv85.5669
summaryfgk4.5533
summaryfgmad108.6984
summaryfgmean811.5211
summaryfgmedian833.0
summaryfgn20712.0
summaryfgp05481.0
summaryfgp951008.0
summaryfgstdv160.4621
tsnr53.857862236211076
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