Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS201/figures/sub-CTS201_task-restbaseline_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS201/figures/sub-CTS201_task-restbaseline_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS201/figures/sub-CTS201_task-restbaseline_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS201/figures/sub-CTS201_task-restbaseline_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS201/figures/sub-CTS201_task-restbaseline_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS201/figures/sub-CTS201_task-restbaseline_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS201/figures/sub-CTS201_task-restbaseline_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS201/figures/sub-CTS201_task-restbaseline_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS201/func/sub-CTS201_task-restbaseline_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum9d20dd58684fa7025c0829fa6e995d44

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime13:53:22.757500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.994855, 0.0319663, -0.0961295, -0.020666, 0.992996, 0.116329]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.129669
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber10
ShimSetting[-322, -19542, 7963, 277, -42, -397, 482, 138]
SliceThickness4
SliceTiming[1.2525, 0, 1.3325, 0.0775, 1.41, 0.155, 1.49, 0.235, 1.5675, 0.3125, 1.645, 0.39, 1.725, 0.47, 1.8025, 0.5475, 1.88, 0.625, 1.96, 0.705, 2.0375, 0.7825, 2.115, 0.8625, 2.195, 0.94, 2.2725, 1.0175, 2.3525, 1.0975, 2.43, 1.175]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestbaseline
TotalReadoutTime0.0371701
TxRefAmp348.397
dcmmetaaffine[[-3.979421615600586, -0.08266405016183853, -0.3966991603374481, 130.1614532470703], [-0.12786512076854706, 3.971982717514038, 0.4549771249294281, -136.68231201171875], [-0.38451796770095825, -0.4653174579143524, 3.954190731048584, -8.43017864227295], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.018363597560975612
aqi0.0939568170731707
dummy_trs0
dvarsnstd28.67207729582822
dvarsstd0.868846407361963
dvarsvstd0.8072624986503067
efc0.4
fber61268.1055
fdmean0.49265316820019955
fdnum119
fdperc72.5609756097561
fwhmavg2.346250833333333
fwhmx2.3616175
fwhmy2.6069
fwhmz2.070235
gcor0.0176666
gsrx-0.027657732367515564
gsry0.011147324927151203
sizet164
sizex64
sizey64
sizez32
snr5.24152134065368
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.0
summarybgk42.6573
summarybgmad2.3053
summarybgmean26.0557
summarybgmedian3.0
summarybgn110096.0
summarybgp051.0
summarybgp95128.0
summarybgstdv79.8409
summaryfgk4.3116
summaryfgmad102.9234
summaryfgmean796.5358
summaryfgmedian820.0
summaryfgn20976.0
summaryfgp05463.0
summaryfgp95983.0
summaryfgstdv156.4394
tsnr27.137064139707945
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