Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-CTS200/figures/sub-CTS200_task-restbaseline_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-CTS200/figures/sub-CTS200_task-restbaseline_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-CTS200/figures/sub-CTS200_task-restbaseline_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-CTS200/figures/sub-CTS200_task-restbaseline_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-CTS200/figures/sub-CTS200_task-restbaseline_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-CTS200/figures/sub-CTS200_task-restbaseline_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-CTS200/figures/sub-CTS200_task-restbaseline_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-CTS200/figures/sub-CTS200_task-restbaseline_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-CTS200/func/sub-CTS200_task-restbaseline_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum1a53b243397330416a687b30bbef5a94

AcquisitionMatrixPE64
AcquisitionNumber1
AcquisitionTime10:25:58.012500
BandwidthPerPixelPhaseEncode26.483
BaseResolution64
BodyPartExaminedHEAD
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 GCC6.3.0
DerivedVendorReportedEchoSpacing0.000590001
DeviceSerialNumber35177
DwellTime4.1e-06
EchoTime0.027
EffectiveEchoSpacing0.000590001
FlipAngle90
ImageOrientationPatientDICOM[0.998568, 0.0503681, -0.0180296, -0.0477107, 0.990909, 0.125787]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC']
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressScott_Ave._4525_St._Louis_MO_US_63110
InstitutionNameWashington_University
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingDirectionj-
PhaseEncodingSteps64
PhaseResolution1
PixelBandwidth1905
ProcedureStepDescriptionhead_GREENE
ProtocolNameep2d_bold_rest1
PulseSequenceDetails%SiemensSeq%_ep2d_bold
ReceiveCoilNameHeadMatrix
ReconMatrixPE64
RepetitionTime2.5
SAR0.152397
ScanOptionsFS
ScanningSequenceEP
SequenceName_epfid2d1_64
SequenceVariantSK
SeriesDescriptionep2d_bold_rest1
SeriesNumber10
ShimSetting[-243, -19609, 8005, 333, 108, -597, 328, -70]
SliceThickness4
SliceTiming[1.255, 0, 1.335, 0.08, 1.4125, 0.1575, 1.49, 0.2375, 1.57, 0.315, 1.6475, 0.3925, 1.7275, 0.4725, 1.805, 0.55, 1.8825, 0.6275, 1.9625, 0.7075, 2.04, 0.785, 2.1175, 0.865, 2.1975, 0.9425, 2.275, 1.02, 2.355, 1.1, 2.4325, 1.1775]
SoftwareVersionssyngo_MR_B17
SpacingBetweenSlices4
StationNameMRC35177
TaskNamerestbaseline
TotalReadoutTime0.0371701
TxRefAmp343.407
dcmmetaaffine[[-3.994271755218506, -0.19084277749061584, -0.09680544584989548, 139.7621612548828], [-0.20147255063056946, 3.963637351989746, 0.49898582696914673, -124.23081970214844], [-0.07211845368146896, -0.5031471252441406, 3.967574119567871, -17.4912166595459], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 63.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[64, 64, 32, 164]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.00904621951219512
aqi0.02488443518292683
dummy_trs0
dvarsnstd22.255092345889576
dvarsstd1.004303195337423
dvarsvstd0.9063669106748468
efc0.4336
fber41920.8398
fdmean0.3333375588052073
fdnum79
fdperc48.170731707317074
fwhmavg2.1587432565889846
fwhmx2.101455
fwhmy2.44344
fwhmz1.9313347697669543
gcor0.0233916
gsrx-0.03290698304772377
gsry0.02550160326063633
sizet164
sizex64
sizey64
sizez32
snr4.53553234875477
spacingtr2.5
spacingx4.0
spacingy4.0
spacingz4.000000476837158
summarybgk28.1534
summarybgmad2.5222
summarybgmean30.288
summarybgmedian3.0
summarybgn108745.0
summarybgp051.0
summarybgp95183.0
summarybgstdv74.2155
summaryfgk2.7429
summaryfgmad94.9499
summaryfgmean642.8556
summaryfgmedian668.0
summaryfgn22327.0
summaryfgp05315.0
summaryfgp95822.0
summaryfgstdv147.2782
tsnr44.008773216279224
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